RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CD5LO43866 347 aa13.76□□□□□ -0.21
VIM-206ENST00000487938 BRD3OSQ6XYD6 125 aa13.76□□□□□ -0.21
VIM-206ENST00000487938 PPBPP02775 128 aa13.75□□□□□ -0.21
VIM-206ENST00000487938 TMEM97Q5BJF2 176 aa13.75□□□□□ -0.21
VIM-206ENST00000487938 ITLN2Q8WWU7 325 aaPredicted RBP13.75□□□□□ -0.21
VIM-206ENST00000487938 TRAV41A0A0B4J266 112 aa13.75□□□□□ -0.21
VIM-206ENST00000487938 OR1N2Q8NGR9 330 aa13.75□□□□□ -0.21
VIM-206ENST00000487938 J3KRW8 73 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 DPF1Q92782 380 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 C16orf92Q96LL3 132 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 NMUP48645 174 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 PCP2Q8IVA1 136 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 BOD1L2Q8IYS8 172 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 PPP1R14DQ9NXH3 145 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 U3KQE9 123 aa13.74□□□□□ -0.21
VIM-206ENST00000487938 TRAV26-2A0A0B4J265 109 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 IGF1P05019 195 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 IGHV7-4-1A0A0J9YVY3 117 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 TRBV12-3P01733 135 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 IGHV4-39P01824 125 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 GNLYP22749 145 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 FCER1GP30273 86 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 PIFOQ8TCI5 191 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 MOB4Q9Y3A3 225 aa13.73□□□□□ -0.21
VIM-206ENST00000487938 TRAV8-6A0A0B4J262 113 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 SMAD7O15105 426 aaKnown RBP13.72□□□□□ -0.21
VIM-206ENST00000487938 C9orf47Q6ZRZ4 202 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 TMEM158Q8WZ71 300 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 C20orf173Q96LM9 149 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 NXT2Q9NPJ8 142 aaKnown RBP13.72□□□□□ -0.21
VIM-206ENST00000487938 UFC1Q9Y3C8 167 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 CBY1Q9Y3M2 126 aa13.72□□□□□ -0.21
VIM-206ENST00000487938 C7orf71A4D174 169 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 PRSS1P07477 247 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 UNQ9165/PRO28630Q6UXU0 137 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 LINC01546A6NGU7 62 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 ARL3P36405 182 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 LY6EQ16553 131 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 PRR9Q5T870 116 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 OR2K2Q8NGT1 345 aa13.71□□□□□ -0.21
VIM-206ENST00000487938 A1L4Q6 167 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 SPRY2O43597 315 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 DEFB1P60022 68 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 TRAV40A0A0B4J280 105 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 K7EP13 123 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 SPANXN1Q5VSR9 72 aa13.7□□□□□ -0.22
VIM-206ENST00000487938 MRPL53Q96EL3 112 aaKnown RBP13.7□□□□□ -0.22
VIM-206ENST00000487938 IGHV1-69DA0A0B4J2H0 117 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 IGHV1-69P01742 117 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 C19orf54Q5BKX5 351 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 SMIM15Q7Z3B0 74 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 GLMPQ8WWB7 406 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 NPFFR1Q9GZQ6 430 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 SELENOKQ9Y6D0 94 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 IGLV2-18A0A075B6J9 118 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 H3BVH4 76 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 ODF1Q14990 250 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 Q8N8P6 123 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 HIF1ANQ9NWT6 349 aa13.69□□□□□ -0.22
VIM-206ENST00000487938 ABCA2Q9BZC7 2435 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 ITPR1Q14643 2758 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 FAM223BA6NKX1 122 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 IGHV3-11P01762 117 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 SEC11AP67812 179 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 FAM223AQ8IWN6 122 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 COL12A1Q99715 3063 aa13.68□□□□□ -0.22
VIM-206ENST00000487938 IGHV4-61A0A0C4DH41 118 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 FOXC2Q99958 501 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 TTTY13Q9BZ97 58 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 PEF1Q9UBV8 284 aaKnown RBP13.67□□□□□ -0.22
VIM-206ENST00000487938 SPTAN1Q13813 2472 aaKnown RBP13.67□□□□□ -0.22
VIM-206ENST00000487938 IGKV2D-26A0A0A0MRZ7 120 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 IGHV4-38-2P0DP08 117 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 NRACQ8N912 160 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 HHLA3Q9XRX5 114 aa13.67□□□□□ -0.22
VIM-206ENST00000487938 IGKV3-7A0A075B6H7 116 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 SMIM17P0DL12 118 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 ADAMTSL5Q6ZMM2 481 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 GPHB5Q86YW7 130 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 OR9G4Q8NGQ1 327 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 NAA38Q9BRA0 125 aaKnown RBP13.66□□□□□ -0.22
VIM-206ENST00000487938 RBX1P62877 108 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 RPL11P62913 178 aaKnown RBP13.66□□□□□ -0.22
VIM-206ENST00000487938 LCNL1Q6ZST4 164 aa13.66□□□□□ -0.22
VIM-206ENST00000487938 KLK15Q9H2R5 256 aa13.65□□□□□ -0.22
VIM-206ENST00000487938 ZMAT4Q9H898 229 aa13.65□□□□□ -0.22
VIM-206ENST00000487938 HSD52Q0P140 79 aa13.65□□□□□ -0.22
VIM-206ENST00000487938 C9orf139Q6ZV77 190 aa13.65□□□□□ -0.22
VIM-206ENST00000487938 GTSCR1Q86UQ5 136 aa13.65□□□□□ -0.22
VIM-206ENST00000487938 MAP1AP78559 2803 aaPredicted RBP13.64□□□□□ -0.23
VIM-206ENST00000487938 SIVA1O15304 175 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 IGKCP01834 107 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 TM4SF20Q53R12 229 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 Q6ZS46 218 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 A6NDN8 102 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 BLCAPP62952 87 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 LAGE3Q14657 143 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 KIR3DS1Q14943 382 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 OR4X2Q8NGF9 303 aa13.64□□□□□ -0.23
VIM-206ENST00000487938 RAB37Q96AX2 223 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms