RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CENPWQ5EE01 88 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 PRR9Q5T870 116 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 GFI1BQ5VTD9 330 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 SBSPONQ8IVN8 264 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 TMEM183AQ8IXX5 376 aa8.93□□□□□ -0.98
SDC1-206ENST00000482879 TRAV12-3A0A0B4J271 114 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 ZNF727A8MUV8 499 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 DEFB135Q30KP9 77 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 UQCC3Q6UW78 93 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 Q6ZWC4 215 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 NHLRC2Q8NBF2 726 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 CSNK1G2-AS1Q8NCQ2 148 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 SMIM7Q9BQ49 75 aa8.92□□□□□ -0.98
SDC1-206ENST00000482879 IGHV3OR16-12A0A075B7B8 117 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 C9JCJ5 164 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 GCGP01275 180 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 SOHLH1Q5JUK2 328 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 C1orf158Q8N1D5 194 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 EIF4E3Q8N5X7 224 aaKnown RBP8.91□□□□□ -0.98
SDC1-206ENST00000482879 ZC2HC1AQ96GY0 325 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 RCHY1Q96PM5 261 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 B9D2Q9BPU9 175 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 NIPSNAP3BQ9BS92 247 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 TMEM208Q9BTX3 173 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 MLST8Q9BVC4 326 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 GOLT1BQ9Y3E0 138 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 NBEAL2Q6ZNJ1 2754 aa8.91□□□□□ -0.98
SDC1-206ENST00000482879 TRBV20OR9-2A0A075B6H5 130 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 PGPEP1LA6NFU8 196 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 SPRY2O43597 315 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 ZNF324O75467 553 aaPredicted RBP8.9□□□□□ -0.98
SDC1-206ENST00000482879 SFTA3P0C7M3 94 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 RBMY1A1P0DJD3 496 aaKnown RBP8.9□□□□□ -0.98
SDC1-206ENST00000482879 RBMY1CP0DJD4 496 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 MGST1P10620 155 aaKnown RBP8.9□□□□□ -0.98
SDC1-206ENST00000482879 ZNF80P51504 273 aaPredicted RBP8.9□□□□□ -0.98
SDC1-206ENST00000482879 RBMY1FQ15415 496 aaKnown RBP8.9□□□□□ -0.98
SDC1-206ENST00000482879 FAM74A3Q4VXF1 159 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 Q6AWC8 147 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 Q6ZQT7 251 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 COX8CQ7Z4L0 72 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 RNF183Q96D59 192 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 LINC01587Q99440 93 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 C20orf144Q9BQM9 153 aa8.9□□□□□ -0.98
SDC1-206ENST00000482879 TRAV21A0A0B4J279 112 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 FABP5P3A8MUU1 101 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 IGLV2-8P01709 118 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 TMEM256Q8N2U0 113 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 OCC1Q8TAD7 63 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 SMIM12Q96EX1 92 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 OVOL2Q9BRP0 275 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 RETNQ9HD89 108 aa8.89□□□□□ -0.99
SDC1-206ENST00000482879 H7BYZ3 331 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 PFN1P07737 140 aaKnown RBP8.88□□□□□ -0.99
SDC1-206ENST00000482879 HTN1P15515 57 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 CRIP1P50238 77 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 TMEM241Q24JQ0 296 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 FAM162BQ5T6X4 162 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 PRR27Q6MZM9 219 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 ZNF705AQ6ZN79 300 aaPredicted RBP8.88□□□□□ -0.99
SDC1-206ENST00000482879 OR11H2Q8NH07 326 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 SPATA25Q9BR10 227 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 TM2D3Q9BRN9 247 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 ZMAT4Q9H898 229 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 BIN3Q9NQY0 253 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 TP53TG1Q9Y2A0 90 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 MEGF8Q7Z7M0 2845 aa8.88□□□□□ -0.99
SDC1-206ENST00000482879 TMEM218A2RU14 115 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 ZNF705GA8MUZ8 300 aaPredicted RBP8.87□□□□□ -0.99
SDC1-206ENST00000482879 SH2D1AO60880 128 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 OR5I1Q13606 314 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 MUC21Q5SSG8 566 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 PYGO2Q9BRQ0 406 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 NAT8Q9UHE5 227 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 NAGKQ9UJ70 344 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 LY96Q9Y6Y9 160 aa8.87□□□□□ -0.99
SDC1-206ENST00000482879 IGHV1OR15-1A0A075B7D0 117 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 K7EN84 100 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 PRM2P04554 102 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 NDUFA5Q16718 116 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 FAM159AQ6UWV7 190 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 SLC7A5P1Q8MH63 180 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 DAZAP1Q96EP5 407 aaKnown RBP8.86□□□□□ -0.99
SDC1-206ENST00000482879 NEU1Q99519 415 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 X6R8D5 127 aa8.86□□□□□ -0.99
SDC1-206ENST00000482879 SMIM9A6NGZ8 99 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 F8W036 122 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 ORM1P02763 201 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 NHLRC4P0CG21 123 aaPredicted RBP8.85□□□□□ -0.99
SDC1-206ENST00000482879 RPL23P62829 140 aaKnown RBP8.85□□□□□ -0.99
SDC1-206ENST00000482879 RRN3P1Q2M238 152 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 ANXA2RQ3ZCQ2 193 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 LINC01551Q86U37 167 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 LINC00467Q9BRT7 94 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 SDF2L1Q9HCN8 221 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 C11orf21Q9P2W6 132 aa8.85□□□□□ -0.99
SDC1-206ENST00000482879 CBY3A6NI87 242 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 M0R036 132 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 AZU1P20160 251 aa8.84□□□□□ -0.99
SDC1-206ENST00000482879 ADIRFQ15847 76 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms