RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 H3BRM9 83 aa13.93□□□□□ -0.18
CCM2-209ENST00000477605 AGPAT4-IT1Q9H0P7 198 aa13.93□□□□□ -0.18
CCM2-209ENST00000477605 SMPXQ9UHP9 88 aa13.93□□□□□ -0.18
CCM2-209ENST00000477605 LRRK2Q5S007 2527 aa13.93□□□□□ -0.18
CCM2-209ENST00000477605 ANKHD1Q8IWZ3 2542 aaKnown RBP13.93□□□□□ -0.18
CCM2-209ENST00000477605 CENPVL3A0A0U1RRI6 287 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 SAA4P35542 130 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 TMEM78Q5T7P6 136 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 IL17RELQ6ZVW7 336 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 SMIM15Q7Z3B0 74 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 ZMAT4Q9H898 229 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 IGHV3-35A0A0C4DH35 117 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 CLEC19AQ6UXS0 136 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 C9orf47Q6ZRZ4 202 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 Q8N8P6 123 aa13.92□□□□□ -0.18
CCM2-209ENST00000477605 USP9XQ93008 2570 aaPredicted RBP13.91□□□□□ -0.18
CCM2-209ENST00000477605 DOPEY2Q9Y3R5 2298 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 IGKV3D-20A0A0C4DH25 116 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 LEPP41159 167 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 PTPN13Q12923 2485 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 IGHV4-4A0A075B6R2 117 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 IGHV3OR16-8A0A075B7F1 116 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 TRAV8-2A0A0B4J237 113 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 SNAI2O43623 268 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 LENEPQ9Y5L5 61 aa13.91□□□□□ -0.18
CCM2-209ENST00000477605 SETXQ7Z333 2677 aaKnown RBP13.9□□□□□ -0.18
CCM2-209ENST00000477605 ATP5LO75964 103 aa13.9□□□□□ -0.18
CCM2-209ENST00000477605 FXYD7P58549 80 aa13.9□□□□□ -0.18
CCM2-209ENST00000477605 ADAMTSL5Q6ZMM2 481 aa13.9□□□□□ -0.18
CCM2-209ENST00000477605 RNF182Q8N6D2 247 aa13.9□□□□□ -0.18
CCM2-209ENST00000477605 HECTD1Q9ULT8 2610 aa13.9□□□□□ -0.18
CCM2-209ENST00000477605 NPFFO15130 113 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 LMO4P61968 165 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 ATP5G2Q06055 141 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 HIVEP3Q5T1R4 2406 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 TRAV8-6A0A0B4J262 113 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 C9orf118A6NHY6 69 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 FAM223BA6NKX1 122 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 CRIP2P52943 208 aaPredicted RBP13.89□□□□□ -0.19
CCM2-209ENST00000477605 FOXE3Q13461 319 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 C8orf86Q6ZUL3 223 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 FAM223AQ8IWN6 122 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 C5orf56Q8N8D9 126 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 OR2K2Q8NGT1 345 aa13.89□□□□□ -0.19
CCM2-209ENST00000477605 ODF1Q14990 250 aa13.88□□□□□ -0.19
CCM2-209ENST00000477605 AP1S3Q96PC3 154 aa13.88□□□□□ -0.19
CCM2-209ENST00000477605 DKK2Q9UBU2 259 aa13.88□□□□□ -0.19
CCM2-209ENST00000477605 IGLV2-18A0A075B6J9 118 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 A0A1W2PPR1 153 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 G3V318 75 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 ERASQ7Z444 233 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 CST9LQ9H4G1 147 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 HIGD1BQ9P298 99 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 ADGRG4Q8IZF6 3080 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 HLA-DRB4P13762 266 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 EVI2AP22794 236 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 GTF2H5Q6ZYL4 71 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 C11orf21Q9P2W6 132 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 HLA-DRB4X5D2U9 266 aa13.87□□□□□ -0.19
CCM2-209ENST00000477605 IGHV7-4-1A0A0J9YVY3 117 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 C9orf139Q6ZV77 190 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 ARHGAP32A7KAX9 2087 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 PRSS1P07477 247 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 PCP4P48539 62 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 NMUP48645 174 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 KIR3DS1Q14943 382 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 C19orf54Q5BKX5 351 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 HHLA3Q9XRX5 114 aa13.86□□□□□ -0.19
CCM2-209ENST00000477605 IGHV3-66A0A0C4DH42 116 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 GAGE10A6NGK3 116 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 GAS8-AS1O95177 125 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 IGKCP01834 107 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 PPIFP30405 207 aaKnown RBP13.85□□□□□ -0.19
CCM2-209ENST00000477605 TMEM158Q8WZ71 300 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 C18orf15Q96N68 181 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 UBTD1Q9HAC8 227 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 MOB4Q9Y3A3 225 aa13.85□□□□□ -0.19
CCM2-209ENST00000477605 USP9YO00507 2555 aaPredicted RBP13.85□□□□□ -0.19
CCM2-209ENST00000477605 SPTAN1Q13813 2472 aaKnown RBP13.85□□□□□ -0.19
CCM2-209ENST00000477605 LINC01548A6NM66 108 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 TRAV41A0A0B4J266 112 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 GAGE12BA1L429 117 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 DPM2O94777 84 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 LAGE3Q14657 143 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 C21orf62-AS1Q17RA5 79 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 OCIAD2Q56VL3 154 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 PCP2Q8IVA1 136 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 NRACQ8N912 160 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 GLMPQ8WWB7 406 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 MRAP2Q96G30 205 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 LINC00477Q96M19 166 aa13.84□□□□□ -0.19
CCM2-209ENST00000477605 BRI3O95415 125 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 UFSP1Q6NVU6 142 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 MYOZ3Q8TDC0 251 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 C16orf92Q96LL3 132 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 BPESC1Q9GZL8 116 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 SMIM17P0DL12 118 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 WFDC3Q8IUB2 231 aa13.83□□□□□ -0.2
CCM2-209ENST00000477605 ITLN2Q8WWU7 325 aaPredicted RBP13.83□□□□□ -0.2
CCM2-209ENST00000477605 SPTBN1Q01082 2364 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms