RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 PGLYRP1O75594 196 aaPredicted RBP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 CRYGSP22914 178 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 FUSP35637 526 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 RAB5CP51148 216 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 SNRPFP62306 86 aaKnown RBP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 HES1Q14469 280 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 ZNF345Q14585 488 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 ESRGQ1W209 222 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 IGFL1Q6UW32 110 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 OR4B1Q8NGF8 309 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 ZNF418Q8TF45 676 aaPredicted RBP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 TP53RKQ96S44 253 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 OR5AC2Q9NZP5 309 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 PRO0461Q9UI25 63 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 DENND4CQ5VZ89 1909 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 A0A1W2PNN7 141 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 FAM92AA1XBS5 289 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 KRTAP9-6A8MVA2 160 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 CLPSP04118 112 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 CTSDP07339 412 aaPredicted RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 P0DMU3 169 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 FAM231AP0DMU4 169 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 FAM231CP0DMU5 169 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 RPL22P35268 128 aaKnown RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 RNASE10Q5GAN6 216 aaKnown RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 SPANXN5Q5MJ07 72 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 OR2T35Q8NGX2 323 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 MAGOHBQ96A72 148 aaKnown RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 Q9BRP9 147 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 LINC00467Q9BRT7 94 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 NIT2Q9NQR4 276 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 LY96Q9Y6Y9 160 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 COL11A1P12107 1806 aaPredicted RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 OBSL1O75147 1896 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 NUP210Q8TEM1 1887 aaPredicted RBP2.3□□□□□ -2.04
VPS13D-207ENST00000476169 MYH7BA7E2Y1 1941 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 CENPFP49454 3210 aa2.3□□□□□ -2.04
VPS13D-207ENST00000476169 SEC16AO15027 2179 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 MYH10P35580 1976 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 NUP210LQ5VU65 1888 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 MEIKINA0A087WXM9 373 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 TRAV1-1A0A0B4J248 108 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 TRBV27A0A0K0K1C4 114 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 A0A1B0GV90 55 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 A0A1W2PNU3 283 aaPredicted RBP2.29□□□□□ -2.04
VPS13D-207ENST00000476169 K7EP13 123 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 TPST1O60507 370 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 SMIM24O75264 130 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 SPCS2Q15005 226 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 CDK5R1Q15078 307 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 NEDD8Q15843 81 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 HSD17B12Q53GQ0 312 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 Q5XG85 94 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 C7orf65Q6ZTY9 151 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 DEFB106AQ8N104 65 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 MMGT1Q8N4V1 131 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 DEFB119Q8N690 84 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 FAM216BQ8N7L0 139 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 OR4S1Q8NGB4 309 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 OR5A2Q8NGI9 324 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 MCEEQ96PE7 176 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 RETNLBQ9BQ08 111 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 SLC50A1Q9BRV3 221 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 LPAR5Q9H1C0 372 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 BANF2Q9H503 90 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 SZT2Q5T011 3432 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 PDE4DIPQ5VU43 2346 aa2.29□□□□□ -2.04
VPS13D-207ENST00000476169 MGAMO43451 1857 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 A0A096LPI6 279 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 SDHAF1A6NFY7 115 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 OR2T8A6NH00 312 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 LYRM1O43325 122 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 PROSCO94903 275 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 IGLV3-19P01714 112 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 PRB2P02812 416 aaPredicted RBP2.28□□□□□ -2.04
VPS13D-207ENST00000476169 TPT1P13693 172 aaKnown RBP2.28□□□□□ -2.04
VPS13D-207ENST00000476169 FOXA3P55318 350 aaPredicted RBP2.28□□□□□ -2.04
VPS13D-207ENST00000476169 DNAJB13P59910 316 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 NCS1P62166 190 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 IGFBP7Q16270 282 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 TMEM155Q4W5P6 130 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 PATE2Q6UY27 113 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 Q6ZTI0 123 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 TVP23CQ96ET8 276 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 C20orf166-AS1Q96NR2 134 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 TNFSF18Q9UNG2 199 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 HEATR5AQ86XA9 2040 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 CDH23Q9H251 3354 aa2.28□□□□□ -2.04
VPS13D-207ENST00000476169 BAZ2BQ9UIF8 2168 aaKnown RBP2.27□□□□□ -2.05
VPS13D-207ENST00000476169 TET1Q8NFU7 2136 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 MYH7P12883 1935 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 TTC28Q96AY4 2481 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 TNRC18O15417 2968 aaPredicted RBP2.27□□□□□ -2.05
VPS13D-207ENST00000476169 DSPPQ9NZW4 1301 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 IGLV3-9A0A075B6K5 115 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.27□□□□□ -2.05
VPS13D-207ENST00000476169 FAM25AB3EWG3 89 aa2.27□□□□□ -2.05
VPS13D-207ENST00000476169 FAM25CB3EWG5 89 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms