RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GAGE7O76087 117 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 NUDT3O95989 172 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 SLC25A5P05141 298 aaKnown RBP9.82□□□□□ -0.84
UPF3A-204ENST00000475218 OR10J4P0C629 311 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 NBEAP1P0C6P0 100 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 GAGE12FP0CL80 117 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 GAGE12GP0CL81 117 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 GAGE12IP0CL82 117 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 CRISP2P16562 243 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 EIF5AP63241 154 aaKnown RBP9.82□□□□□ -0.84
UPF3A-204ENST00000475218 NKX6-2Q9C056 277 aaPredicted RBP9.82□□□□□ -0.84
UPF3A-204ENST00000475218 WFDC1Q9HC57 220 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 FAM3BP58499 235 aaPredicted RBP9.81□□□□□ -0.84
UPF3A-204ENST00000475218 DAZ2Q13117 558 aaKnown RBP9.81□□□□□ -0.84
UPF3A-204ENST00000475218 Q6ZTI0 123 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 LINC00477Q96M19 166 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 ATP5SQ99766 215 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 LINC00467Q9BRT7 94 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 OR51M1Q9H341 326 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 FUT9Q9Y231 359 aa9.81□□□□□ -0.84
UPF3A-204ENST00000475218 EIF3GO75821 320 aaKnown RBP eCLIP9.8□□□□□ -0.84
UPF3A-204ENST00000475218 TPT1P13693 172 aaKnown RBP9.8□□□□□ -0.84
UPF3A-204ENST00000475218 PAXXQ9BUH6 204 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 ZNF471Q9BX82 626 aaPredicted RBP9.8□□□□□ -0.84
UPF3A-204ENST00000475218 MRPL32Q9BYC8 188 aaKnown RBP9.8□□□□□ -0.84
UPF3A-204ENST00000475218 TMPRSS5Q9H3S3 457 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 GSN-AS1Q9NRJ2 163 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 MBD2Q9UBB5 411 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 TRAV26-1A0A087WT03 109 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 C10orf91Q5T1B1 145 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 EIF5AL1Q6IS14 154 aaKnown RBP9.8□□□□□ -0.84
UPF3A-204ENST00000475218 SMIM3Q9BZL3 60 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 TP53TG3Q9ULZ0 132 aa9.8□□□□□ -0.84
UPF3A-204ENST00000475218 TMEM218A2RU14 115 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 RNASE4P34096 147 aaKnown RBP9.79□□□□□ -0.84
UPF3A-204ENST00000475218 Q8TAT8 98 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 ATG101Q9BSB4 218 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 AAMDCQ9H7C9 122 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 ZNF492Q9P255 531 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 CARHSP1Q9Y2V2 147 aaKnown RBP9.79□□□□□ -0.84
UPF3A-204ENST00000475218 KLF12Q9Y4X4 402 aa9.79□□□□□ -0.84
UPF3A-204ENST00000475218 RYR1P21817 5038 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 SNURFLB1AK76 121 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 PET100P0DJ07 73 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 RPL12P30050 165 aaKnown RBP9.78□□□□□ -0.84
UPF3A-204ENST00000475218 S100A12P80511 92 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 OR5I1Q13606 314 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 ANXA2RQ3ZCQ2 193 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 C1orf134Q5TEV5 83 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 LINC00518Q8N0U6 118 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 RXFP4Q8TDU9 374 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 KCNIP2Q9NS61 270 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 A0A0J9YY99 117 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 NBDYA0A0U1RRE5 68 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 SNAPINO95295 136 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 FFAR4Q5NUL3 377 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 VSIG2Q96IQ7 327 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 KRTAP1-5Q9BYS1 174 aa9.78□□□□□ -0.84
UPF3A-204ENST00000475218 TAAR5O14804 337 aa9.77□□□□□ -0.85
UPF3A-204ENST00000475218 OR7C2O60412 319 aa9.77□□□□□ -0.85
UPF3A-204ENST00000475218 SSX7Q7RTT5 188 aa9.77□□□□□ -0.85
UPF3A-204ENST00000475218 GNPNAT1Q96EK6 184 aaPredicted RBP9.77□□□□□ -0.85
UPF3A-204ENST00000475218 C18orf15Q96N68 181 aa9.77□□□□□ -0.85
UPF3A-204ENST00000475218 Q9H3A6 140 aa9.77□□□□□ -0.85
UPF3A-204ENST00000475218 MUC4Q99102 2169 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 C17orf112F2Z3M2 114 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 SPINK4O60575 86 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 GPX1P07203 203 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 ZNF138P52744 262 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 TCL1AP56279 114 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 RANP62826 216 aaKnown RBP9.76□□□□□ -0.85
UPF3A-204ENST00000475218 ESRGQ1W209 222 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 TMEM78Q5T7P6 136 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 SEC11CQ9BY50 192 aa9.76□□□□□ -0.85
UPF3A-204ENST00000475218 H3BNG1 76 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 CCL18P55774 89 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 UBE2L3P68036 154 aaKnown RBP9.75□□□□□ -0.85
UPF3A-204ENST00000475218 TNP2Q05952 138 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 ATRAIDQ6UW56 229 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 IBA57Q5T440 356 aaKnown RBP9.75□□□□□ -0.85
UPF3A-204ENST00000475218 AQP10Q96PS8 301 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 BIN3Q9NQY0 253 aa9.75□□□□□ -0.85
UPF3A-204ENST00000475218 IGHV1OR15-1A0A075B7D0 117 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 A0A096LPF7 62 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 TRGV1A0A0A0MS02 117 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 TRBV7-9A0A0J9YWB2 115 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 RBAKDNA6NC62 111 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 DIRC3C9JPN6 131 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 CTAG1AP78358 180 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 ZNF575Q86XF7 245 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 LYPD1Q8N2G4 141 aa9.74□□□□□ -0.85
UPF3A-204ENST00000475218 IFNA5P01569 189 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 RAB2AP61019 212 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 BLOC1S1P78537 153 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 ZNF266Q14584 549 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 KHDC3LQ587J8 217 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 FAM74A1Q5RGS3 127 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 SCGB1C1Q8TD33 95 aa9.73□□□□□ -0.85
UPF3A-204ENST00000475218 MRPL16Q9NX20 251 aaKnown RBP9.73□□□□□ -0.85
UPF3A-204ENST00000475218 HSPG2P98160 4391 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms