RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 UPK3BQ9BT76 320 aa12.83□□□□□ -0.36
COL7A1-209ENST00000474432 Q9H8V8 135 aa12.83□□□□□ -0.36
COL7A1-209ENST00000474432 RYR1P21817 5038 aa12.83□□□□□ -0.36
COL7A1-209ENST00000474432 A0A096LPF7 62 aa12.82□□□□□ -0.36
COL7A1-209ENST00000474432 ZNF266Q14584 549 aa12.82□□□□□ -0.36
COL7A1-209ENST00000474432 ALG5Q9Y673 324 aa12.82□□□□□ -0.36
COL7A1-209ENST00000474432 TRGV2A0A075B6R0 118 aa12.81□□□□□ -0.36
COL7A1-209ENST00000474432 DIRC3C9JPN6 131 aa12.81□□□□□ -0.36
COL7A1-209ENST00000474432 RGS13O14921 159 aa12.81□□□□□ -0.36
COL7A1-209ENST00000474432 IFNA5P01569 189 aa12.81□□□□□ -0.36
COL7A1-209ENST00000474432 SCGB1C1Q8TD33 95 aa12.81□□□□□ -0.36
COL7A1-209ENST00000474432 KHDC3LQ587J8 217 aa12.8□□□□□ -0.36
COL7A1-209ENST00000474432 BATF3Q9NR55 127 aa12.8□□□□□ -0.36
COL7A1-209ENST00000474432 MRPL16Q9NX20 251 aaKnown RBP12.8□□□□□ -0.36
COL7A1-209ENST00000474432 MRPS16Q9Y3D3 137 aaKnown RBP12.8□□□□□ -0.36
COL7A1-209ENST00000474432 RAB2AP61019 212 aa12.79□□□□□ -0.36
COL7A1-209ENST00000474432 Q6AWC8 147 aa12.79□□□□□ -0.36
COL7A1-209ENST00000474432 ST6GAL2Q96JF0 529 aa12.79□□□□□ -0.36
COL7A1-209ENST00000474432 MDFICQ9P1T7 246 aa12.79□□□□□ -0.36
COL7A1-209ENST00000474432 CSN1S1P47710 185 aa12.78□□□□□ -0.36
COL7A1-209ENST00000474432 TAS2R45P59539 299 aa12.78□□□□□ -0.36
COL7A1-209ENST00000474432 MUC21Q5SSG8 566 aa12.78□□□□□ -0.36
COL7A1-209ENST00000474432 LENEPQ9Y5L5 61 aa12.78□□□□□ -0.36
COL7A1-209ENST00000474432 LRP1BQ9NZR2 4599 aa12.78□□□□□ -0.36
COL7A1-209ENST00000474432 IGHV3-53P01767 116 aa12.77□□□□□ -0.37
COL7A1-209ENST00000474432 FHL2Q14192 279 aa12.77□□□□□ -0.37
COL7A1-209ENST00000474432 TMED6Q8WW62 240 aa12.77□□□□□ -0.37
COL7A1-209ENST00000474432 TVP23CQ96ET8 276 aa12.77□□□□□ -0.37
COL7A1-209ENST00000474432 OTORQ9NRC9 128 aa12.77□□□□□ -0.37
COL7A1-209ENST00000474432 PGPA6NDG6 321 aa12.76□□□□□ -0.37
COL7A1-209ENST00000474432 ACOT6Q3I5F7 207 aaPredicted RBP12.76□□□□□ -0.37
COL7A1-209ENST00000474432 Q5BKY6 102 aa12.76□□□□□ -0.37
COL7A1-209ENST00000474432 PQLC2Q6ZP29 291 aa12.76□□□□□ -0.37
COL7A1-209ENST00000474432 HYLS1Q96M11 299 aa12.76□□□□□ -0.37
COL7A1-209ENST00000474432 ARPC5LQ9BPX5 153 aa12.76□□□□□ -0.37
COL7A1-209ENST00000474432 HMGB3O15347 200 aaKnown RBP12.75□□□□□ -0.37
COL7A1-209ENST00000474432 HSPG2P98160 4391 aa12.75□□□□□ -0.37
COL7A1-209ENST00000474432 ZNF415Q09FC8 603 aa12.75□□□□□ -0.37
COL7A1-209ENST00000474432 PAX4O43316 350 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 CRYBA4P53673 196 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 TDRG1Q3Y452 100 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 ARL6IP6Q8N6S5 226 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 OR10G4Q8NGN3 311 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 OR10G9Q8NGN4 311 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 OR10G7Q8NGN6 311 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 AQP10Q96PS8 301 aa12.74□□□□□ -0.37
COL7A1-209ENST00000474432 TRAV8-1A0A0A6YYK1 113 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 A0A1W2PPQ1 181 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 A0A1W2PPV4 95 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 PTTG1O95997 202 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 GNG5P63218 68 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 TTC32Q5I0X7 151 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 GOLT1AQ6ZVE7 132 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 OR2G3Q8NGZ4 309 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 SUN5Q8TC36 379 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 RASL10AQ92737 203 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 PRO0255Q9UI72 69 aa12.73□□□□□ -0.37
COL7A1-209ENST00000474432 STAG3L2P0CL84 134 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 STAG3L3P0CL85 134 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 ARL14EPLP0DKL9 152 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 TMEM183BQ1AE95 376 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 TMEM183AQ8IXX5 376 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 HSD17B11Q8NBQ5 300 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 ZNF479Q96JC4 524 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 C8orf49Q96NF6 230 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 RPH3ALQ9UNE2 315 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 HHLA3Q9XRX5 114 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 ABCA13Q86UQ4 5058 aa12.72□□□□□ -0.37
COL7A1-209ENST00000474432 GNRH2O43555 120 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 SFTA3P0C7M3 94 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 ATP6V0CP27449 155 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 IQCF2Q8IXL9 164 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 CMTM2Q8TAZ6 248 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 PSMG3Q9BT73 122 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-209ENST00000474432 KRTAP4-5Q9BYR2 181 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 ICOSQ9Y6W8 199 aa12.71□□□□□ -0.37
COL7A1-209ENST00000474432 CDC34P49427 236 aaPredicted RBP12.7□□□□□ -0.38
COL7A1-209ENST00000474432 LYPD5Q6UWN5 251 aa12.7□□□□□ -0.38
COL7A1-209ENST00000474432 FAM159AQ6UWV7 190 aa12.7□□□□□ -0.38
COL7A1-209ENST00000474432 Q6ZRN7 208 aaPredicted RBP12.7□□□□□ -0.38
COL7A1-209ENST00000474432 RAB24Q969Q5 203 aa12.7□□□□□ -0.38
COL7A1-209ENST00000474432 SPXQ9BT56 116 aa12.7□□□□□ -0.38
COL7A1-209ENST00000474432 MED28Q9H204 178 aa12.7□□□□□ -0.38
COL7A1-209ENST00000474432 DNAH5Q8TE73 4624 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 TRGV11A0A075B6L2 103 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 IGHV3-16A0A0C4DH30 117 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 C16orf90A8MZG2 172 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 F6UZH7 168 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 SLAQ13239 276 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 FAM74A1Q5RGS3 127 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 SGK494Q96LW2 274 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 SH3BGRL3Q9H299 93 aa12.69□□□□□ -0.38
COL7A1-209ENST00000474432 APOBP04114 4563 aaKnown RBP12.68□□□□□ -0.38
COL7A1-209ENST00000474432 RNF222A6NCQ9 220 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 SIVA1O15304 175 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 NXPH4O95158 308 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 TYMSP04818 313 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 BTF3P20290 206 aaKnown RBP12.68□□□□□ -0.38
COL7A1-209ENST00000474432 GCHFRP30047 84 aa12.68□□□□□ -0.38
COL7A1-209ENST00000474432 LINC00315P59091 139 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms