RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	ODF3L1	Q8IXM7	274 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	SMCR5	Q8TEV8	140 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	ABHD14B	Q96IU4	210 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	C11orf21	Q9P2W6	132 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	CABIN1	Q9Y6J0	2220 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	RANBP2	P49792	3224 aa	Known RBP	2.57	□□□□□ -2
UBR3-208	ENST00000474426	MYMX	A0A1B0GTQ4	84 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	WISP3	O95389	354 aa	Predicted RBP	2.57	□□□□□ -2
UBR3-208	ENST00000474426	CXCL8	P10145	99 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	TMEM170B	Q5T4T1	132 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	MPLKIP	Q8TAP9	179 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	LMO7	Q8WWI1	1683 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	TRBV7-1	A0A0A6YYK4	115 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	IGHV1-69D	A0A0B4J2H0	117 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426		E7EQL1	145 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	NPY	P01303	97 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	CCL4	P13236	92 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	RPL30	P62888	115 aa	Known RBP	2.57	□□□□□ -2
UBR3-208	ENST00000474426	UBE2B	P63146	152 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	RHOH	Q15669	191 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	GUSBP11	Q6P575	273 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	IL36B	Q9NZH7	164 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426	LY96	Q9Y6Y9	160 aa		2.57	□□□□□ -2
UBR3-208	ENST00000474426		A8MU10	97 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	ZNF714	Q96N38	554 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	ZNF702P	Q9H963	129 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	TRBV5-3	A0A0A0MS03	114 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	LEPROTL1	O95214	131 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	IGLV2-8	P01709	118 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	FUS	P35637	526 aa	Known RBP eCLIP	2.56	□□□□□ -2
UBR3-208	ENST00000474426	PATE2	Q6UY27	113 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	NOTCH2NL	Q7Z3S9	236 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	MYOF	Q9NZM1	2061 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426		H3BVH4	76 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	ACYP1	P07311	99 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	LINC00242	Q5T6M2	205 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	SLC25A29	Q8N8R3	303 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	NPCDR1	Q9BY65	106 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	CD163L1	Q9NR16	1453 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	SCN7A	Q01118	1682 aa		2.56	□□□□□ -2
UBR3-208	ENST00000474426	IGLV3-12	A0A075B6K2	115 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	CEBPZOS	A8MTT3	80 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	COX7A2P2	O60397	106 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	IL4	P05112	153 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	IL9	P15248	144 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	XCL1	P47992	114 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	BLCAP	P62952	87 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426		Q1T7F1	81 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	IGLV3-9	A0A075B6K5	115 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	CRYM-AS1	A6NIL9	109 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	HMGA2	P52926	109 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	MFAP2	P55001	183 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	SOSTDC1	Q6X4U4	206 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426		Q6ZRM9	215 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	TRBV25-1	A0A075B6N4	114 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	LINC00473	A8K010	186 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	IQCF6	A8MYZ5	107 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426		J3QRE1	110 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	CDK2AP2	O75956	126 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	PEBP1	P30086	187 aa	Known RBP	2.55	□□□□□ -2
UBR3-208	ENST00000474426	CRIP2	P52943	208 aa	Predicted RBP	2.55	□□□□□ -2
UBR3-208	ENST00000474426	CHCHD1	Q96BP2	118 aa	Known RBP	2.55	□□□□□ -2
UBR3-208	ENST00000474426	C11orf1	Q9H5F2	150 aa		2.55	□□□□□ -2
UBR3-208	ENST00000474426	FAM223B	A6NKX1	122 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426		H3BMM0	161 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	S100A3	P33764	101 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	ATP5E	P56381	51 aa	Predicted RBP	2.54	□□□□□ -2
UBR3-208	ENST00000474426	UBE2W	Q96B02	151 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	C6orf106	Q9H6K1	298 aa	Predicted RBP	2.54	□□□□□ -2
UBR3-208	ENST00000474426	COL18A1	P39060	1754 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	COL6A3	P12111	3177 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	TRBV7-3	A0A075B6L6	115 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426		C9JCJ5	164 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	PRM2	P04554	102 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	NPPC	P23582	126 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	SUPT4H1	P63272	117 aa	Known RBP	2.54	□□□□□ -2
UBR3-208	ENST00000474426	MYO16	Q9Y6X6	1858 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	C10orf142	B7Z368	130 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426		E7EUB6	86 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	CRYBA2	P53672	197 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	NANOS3	P60323	173 aa	Known RBP	2.54	□□□□□ -2
UBR3-208	ENST00000474426	ADIG	Q0VDE8	80 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	KLKP1	Q107X0	134 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	ATP11AUN	Q6ZP68	121 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	NABP2	Q9BQ15	211 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	SND1-IT1	Q9HBX3	110 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	IL36RN	Q9UBH0	155 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	ZNF407	Q9C0G0	2248 aa		2.54	□□□□□ -2
UBR3-208	ENST00000474426	IGKV6-21	A0A0C4DH24	114 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	LOC100996750	A0A140TA64	210 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	PIRT	P0C851	137 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	RPS27L	Q71UM5	84 aa	Known RBP	2.53	□□□□□ -2
UBR3-208	ENST00000474426	PDPN	Q86YL7	162 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	SPTSSA	Q969W0	71 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	KRTAP4-6	Q9BYQ5	205 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	MRPL35	Q9NZE8	188 aa	Known RBP	2.53	□□□□□ -2
UBR3-208	ENST00000474426	EP400	Q96L91	3159 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426		A0A0G2JMZ2	1700 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	LRRC37A2	A6NM11	1700 aa		2.53	□□□□□ -2
UBR3-208	ENST00000474426	LRRC37A	A6NMS7	1700 aa		2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms