RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SNRPD3P62318 126 aaKnown RBP0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 BLCAPP62952 87 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 QRFPP83859 136 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 C6orf52Q5T4I8 152 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 Q6ZS92 163 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 SMIM15Q7Z3B0 74 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 TCTEX1D1Q8N7M0 179 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 TMEM229BQ8NBD8 167 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 OR9Q1Q8NGQ5 310 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 BRK1Q8WUW1 75 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 NAT14Q8WUY8 206 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 ASCC3Q8N3C0 2202 aaKnown RBP0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 MUC5ACP98088 5654 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 DSPPQ9NZW4 1301 aa0.38□□□□□ -2.35
CCDC88A-212ENST00000474059 LOC285556D6RIA3 1793 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 PRORSD1PA6NEY8 169 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 EDF1O60869 148 aaKnown RBP0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 GYPBP06028 91 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 S100GP29377 79 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 RPL22P35268 128 aaKnown RBP0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 CAV3P56539 151 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 DNAJB13P59910 316 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 CCSMST1Q4G0I0 132 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 C3orf62Q6ZUJ4 267 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 NDUFAF1Q9Y375 327 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 WDR97A6NE52 1622 aa0.37□□□□□ -2.35
CCDC88A-212ENST00000474059 MYH1P12882 1939 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 MED12Q93074 2177 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 XIRP1Q702N8 1843 aaKnown RBP0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 TRPM7Q96QT4 1865 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 HBDP02042 147 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 PRH1P02810 166 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 ETV6P41212 452 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 GTF2A1P52655 376 aaPredicted RBP0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 GLYATL3Q5SZD4 288 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 XAF1Q6GPH4 301 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 TMEM35BQ8NCS4 154 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 OR8J3Q8NGG0 315 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 OR5A2Q8NGI9 324 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 FAM103A1Q9BTL3 118 aaKnown RBP0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 JPT1Q9UK76 154 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 KCPQ6ZWJ8 1503 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 MUC4Q99102 2169 aa0.36□□□□□ -2.35
CCDC88A-212ENST00000474059 ATG2AQ2TAZ0 1938 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 IFITM5A6NNB3 132 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 H0YJX3 145 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 CDC42EP2O14613 210 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 LY6G6CO95867 125 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 KDELR1P24390 212 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 FXYD6P3P58550 94 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 KRTAP21-1Q3LI58 79 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 OTOSQ8NHW6 89 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 SKA2Q8WVK7 121 aaPredicted RBP0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 SMIM7Q9BQ49 75 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 C19orf12Q9NSK7 152 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 MRPL35Q9NZE8 188 aaKnown RBP0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 MRPL36Q9P0J6 103 aaKnown RBP0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 COMMD3Q9UBI1 195 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 KDM5CP41229 1560 aa0.35□□□□□ -2.35
CCDC88A-212ENST00000474059 MED23Q9ULK4 1368 aa0.34□□□□□ -2.35
CCDC88A-212ENST00000474059 OVOS2A0A0G2JMS6 1433 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 NBDYA0A0U1RRE5 68 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 LOC101927531A0A1B0GV80 90 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 GNG14A0A1W2PPG7 69 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 TMEM189A5PLL7 270 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 TSTD3H0UI37 97 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 J3KT08 172 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 UQCRQO14949 82 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 IGF2P01344 180 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 IGKCP01834 107 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 SLC25A5P05141 298 aaKnown RBP0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 EVI2AP22794 236 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 SPINK7P58062 85 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 LSM3P62310 102 aaKnown RBP0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 FXYD3Q14802 87 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 C10orf99Q6UWK7 81 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 DEFB132Q7Z7B7 95 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 LINC00208Q96KT6 92 aa0.34□□□□□ -2.36
CCDC88A-212ENST00000474059 IGHV1-24A0A0C4DH33 117 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 TMEM30CPA0ZSE6 113 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 TPST1O60507 370 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 TCRAP04437 139 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 IL7P13232 177 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 CKS2P33552 79 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 B2MP61769 119 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 Q5XG85 94 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 LYPD5Q6UWN5 251 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 SMR3AQ99954 134 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 PLAC8Q9NZF1 115 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 GINS2Q9Y248 185 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 LRP5O75197 1615 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 CDK12Q9NYV4 1490 aaPredicted RBP0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 RREB1Q92766 1687 aa0.33□□□□□ -2.36
CCDC88A-212ENST00000474059 KIDINS220Q9ULH0 1771 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 FRAS1Q86XX4 4008 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 AFDNP55196 1824 aaKnown RBP0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 HIGD1CA8MV81 97 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 NBEAP1P0C6P0 100 aa0.32□□□□□ -2.36
CCDC88A-212ENST00000474059 KRTAP2-3P0C7H8 128 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms