RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TCL1AP56279 114 aa10.92□□□□□ -0.66
CCDC88B-205ENST00000472524 LYPD1Q8N2G4 141 aa10.92□□□□□ -0.66
CCDC88B-205ENST00000472524 HYLS1Q96M11 299 aa10.92□□□□□ -0.66
CCDC88B-205ENST00000472524 SPINK4O60575 86 aa10.91□□□□□ -0.66
CCDC88B-205ENST00000472524 ACOT6Q3I5F7 207 aaPredicted RBP10.91□□□□□ -0.66
CCDC88B-205ENST00000472524 MRPL16Q9NX20 251 aaKnown RBP10.91□□□□□ -0.66
CCDC88B-205ENST00000472524 RPH3ALQ9UNE2 315 aa10.91□□□□□ -0.66
CCDC88B-205ENST00000472524 RBAKDNA6NC62 111 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 DIRC3C9JPN6 131 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 IGHV3-53P01767 116 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 RAB2AP61019 212 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 MUC21Q5SSG8 566 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 IBA57Q5T440 356 aaKnown RBP10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 C6orf223Q8N319 242 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 Q9H8V8 135 aa10.9□□□□□ -0.66
CCDC88B-205ENST00000472524 TRBV7-9A0A0J9YWB2 115 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 A0A1W2PPV4 95 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 H3BNG1 76 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 HMGB3O15347 200 aaKnown RBP10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 TNP2Q05952 138 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 ZNF415Q09FC8 603 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 ESRGQ1W209 222 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 VSIG2Q96IQ7 327 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 C18orf15Q96N68 181 aa10.89□□□□□ -0.67
CCDC88B-205ENST00000472524 PGPA6NDG6 321 aa10.88□□□□□ -0.67
CCDC88B-205ENST00000472524 ZNF266Q14584 549 aa10.88□□□□□ -0.67
CCDC88B-205ENST00000472524 CMTM2Q8TAZ6 248 aa10.88□□□□□ -0.67
CCDC88B-205ENST00000472524 OTORQ9NRC9 128 aa10.88□□□□□ -0.67
CCDC88B-205ENST00000472524 A0A096LPF7 62 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 PTTG1O95997 202 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 FAM74A1Q5RGS3 127 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 PQLC2Q6ZP29 291 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 HSD17B11Q8NBQ5 300 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 OR10G4Q8NGN3 311 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 OR10G9Q8NGN4 311 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 OR10G7Q8NGN6 311 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 ST6GAL2Q96JF0 529 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 MED28Q9H204 178 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 MRPS16Q9Y3D3 137 aaKnown RBP10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 HSPG2P98160 4391 aa10.87□□□□□ -0.67
CCDC88B-205ENST00000472524 GOLT1AQ6ZVE7 132 aa10.86□□□□□ -0.67
CCDC88B-205ENST00000472524 UPK3BQ9BT76 320 aa10.86□□□□□ -0.67
CCDC88B-205ENST00000472524 NAGKQ9UJ70 344 aa10.86□□□□□ -0.67
CCDC88B-205ENST00000472524 LENEPQ9Y5L5 61 aa10.86□□□□□ -0.67
CCDC88B-205ENST00000472524 C16orf90A8MZG2 172 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 PAX4O43316 350 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 ARL14EPLP0DKL9 152 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 CDC34P49427 236 aaPredicted RBP10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 GNG5P63218 68 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 TMEM183BQ1AE95 376 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 TTC32Q5I0X7 151 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 Q6AWC8 147 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 FAM159AQ6UWV7 190 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 TMEM183AQ8IXX5 376 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 KRTAP1-5Q9BYS1 174 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 MDFICQ9P1T7 246 aa10.85□□□□□ -0.67
CCDC88B-205ENST00000472524 F6UZH7 168 aa10.84□□□□□ -0.67
CCDC88B-205ENST00000472524 TMED6Q8WW62 240 aa10.84□□□□□ -0.67
CCDC88B-205ENST00000472524 AQP10Q96PS8 301 aa10.84□□□□□ -0.67
CCDC88B-205ENST00000472524 ICOSQ9Y6W8 199 aa10.84□□□□□ -0.67
CCDC88B-205ENST00000472524 TRGV11A0A075B6L2 103 aa10.83□□□□□ -0.68
CCDC88B-205ENST00000472524 TRAV8-1A0A0A6YYK1 113 aa10.83□□□□□ -0.68
CCDC88B-205ENST00000472524 OR2G3Q8NGZ4 309 aa10.83□□□□□ -0.68
CCDC88B-205ENST00000472524 C8orf49Q96NF6 230 aa10.83□□□□□ -0.68
CCDC88B-205ENST00000472524 PRO0255Q9UI72 69 aa10.83□□□□□ -0.68
CCDC88B-205ENST00000472524 LRP1BQ9NZR2 4599 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 TRGV4A0A0C4DH28 118 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 SFTA3P0C7M3 94 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 ATP6V0CP27449 155 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 CRYBA4P53673 196 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 FHL2Q14192 279 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 Q5BKY6 102 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 SGK494Q96LW2 274 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 TREM1Q9NP99 234 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 HHLA3Q9XRX5 114 aa10.82□□□□□ -0.68
CCDC88B-205ENST00000472524 GIPP09681 153 aaPredicted RBP10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 STAG3L2P0CL84 134 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 STAG3L3P0CL85 134 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 SLAQ13239 276 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 ARL6IP6Q8N6S5 226 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 RAB24Q969Q5 203 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 TVP23CQ96ET8 276 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 SPXQ9BT56 116 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 PSMG3Q9BT73 122 aaPredicted RBP10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 SH3BGRL3Q9H299 93 aa10.81□□□□□ -0.68
CCDC88B-205ENST00000472524 TRAV21A0A0B4J279 112 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 A0A1W2PPQ1 181 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 GNRH2O43555 120 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 CDK2AP2O75956 126 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 GCHFRP30047 84 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 MAPKAPK5-AS1Q8N8E1 139 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 ZNF479Q96JC4 524 aa10.8□□□□□ -0.68
CCDC88B-205ENST00000472524 FXYD6-FXYD2A0A087WZ82 144 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 SIVA1O15304 175 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 NXPH4O95158 308 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 MBP02144 154 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 TYMSP04818 313 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 MRPL23Q16540 153 aaKnown RBP10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 TDRG1Q3Y452 100 aa10.79□□□□□ -0.68
CCDC88B-205ENST00000472524 IQCF2Q8IXL9 164 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms