RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TM2D2Q9BX73 214 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 TMEM14CQ9P0S9 112 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 TRAV8-6A0A0B4J262 113 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 C9orf170A2RU37 121 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 SMIM18P0DKX4 95 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 OR10J3Q5JRS4 329 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 OR1L4Q8NGR5 311 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 SPXQ9BT56 116 aa12.06□□□□□ -0.48
SHH-205ENST00000472308 SCGB1D2O95969 90 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 HIST1H1EP10412 219 aaKnown RBP12.05□□□□□ -0.48
SHH-205ENST00000472308 GATA1P15976 413 aaPredicted RBP12.05□□□□□ -0.48
SHH-205ENST00000472308 TNFSF8P32971 234 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 TMEM183BQ1AE95 376 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 FAM122CQ6P4D5 195 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 TMEM183AQ8IXX5 376 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 OR4C5Q8NGB2 326 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 PFDN5Q99471 154 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 TIMM9Q9Y5J7 89 aa12.05□□□□□ -0.48
SHH-205ENST00000472308 IGHV3-16A0A0C4DH30 117 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 C7orf66A4D0T2 115 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 FABP12A6NFH5 140 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 RS1O15537 224 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 IGLV2-8P01709 118 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 ZNF138P52744 262 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 DYNC2LI1Q8TCX1 351 aa12.04□□□□□ -0.48
SHH-205ENST00000472308 UBE2MP61081 183 aaKnown RBP12.03□□□□□ -0.48
SHH-205ENST00000472308 ASAH1Q13510 395 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 ZNF266Q14584 549 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 TDRG1Q3Y452 100 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 LELP1Q5T871 98 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 TOMM5Q8N4H5 51 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 DAZAP1Q96EP5 407 aaKnown RBP12.03□□□□□ -0.48
SHH-205ENST00000472308 SLC39A9Q9NUM3 307 aa12.03□□□□□ -0.48
SHH-205ENST00000472308 TRBV7-9A0A0J9YWB2 115 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 AP3S2P59780 193 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 BAALCQ8WXS3 180 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 AAMDCQ9H7C9 122 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 WDR83OSQ9Y284 106 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 BOLA1Q9Y3E2 137 aa12.02□□□□□ -0.49
SHH-205ENST00000472308 PFN1P07737 140 aaKnown RBP12.01□□□□□ -0.49
SHH-205ENST00000472308 RAB31Q13636 194 aa12.01□□□□□ -0.49
SHH-205ENST00000472308 IAH1Q2TAA2 248 aaPredicted RBP12.01□□□□□ -0.49
SHH-205ENST00000472308 Q6AWC8 147 aa12.01□□□□□ -0.49
SHH-205ENST00000472308 C12orf45Q8N5I9 185 aaPredicted RBP12.01□□□□□ -0.49
SHH-205ENST00000472308 SLC25A29Q8N8R3 303 aa12.01□□□□□ -0.49
SHH-205ENST00000472308 TRGV11A0A075B6L2 103 aa12□□□□□ -0.49
SHH-205ENST00000472308 RBFOX3A6NFN3 312 aa12□□□□□ -0.49
SHH-205ENST00000472308 MBPP02686 304 aaPredicted RBP12□□□□□ -0.49
SHH-205ENST00000472308 RPL29P47914 159 aaKnown RBP12□□□□□ -0.49
SHH-205ENST00000472308 BAK1Q16611 211 aa12□□□□□ -0.49
SHH-205ENST00000472308 SLIRPQ9GZT3 109 aaKnown RBP12□□□□□ -0.49
SHH-205ENST00000472308 M0R2P5 195 aa11.99□□□□□ -0.49
SHH-205ENST00000472308 RPL37AP61513 92 aaKnown RBP11.99□□□□□ -0.49
SHH-205ENST00000472308 ACOT6Q3I5F7 207 aaPredicted RBP11.99□□□□□ -0.49
SHH-205ENST00000472308 GCSAMLQ5JQS6 135 aa11.99□□□□□ -0.49
SHH-205ENST00000472308 SLC25A2Q9BXI2 301 aa11.99□□□□□ -0.49
SHH-205ENST00000472308 TRAV8-3A0A0A6YYJ7 113 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 CST7O76096 145 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 VWC2Q2TAL6 325 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 FAM159AQ6UWV7 190 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 FAM167A-AS1Q96KT0 104 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 UQCC1Q9NVA1 299 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 GSKIPQ9P0R6 139 aa11.98□□□□□ -0.49
SHH-205ENST00000472308 GNRH2O43555 120 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 IGLV2-11P01706 119 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 PYDC2Q56P42 97 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 DAZ4Q86SG3 579 aaKnown RBP11.97□□□□□ -0.49
SHH-205ENST00000472308 GTSF1LQ9H1H1 148 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 GPN1Q9HCN4 374 aaPredicted RBP11.97□□□□□ -0.49
SHH-205ENST00000472308 DAZ3Q9NR90 486 aaKnown RBP11.97□□□□□ -0.49
SHH-205ENST00000472308 FLVCR2Q9UPI3 526 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 V9GYH0 126 aa11.97□□□□□ -0.49
SHH-205ENST00000472308 UBE2L5PA0A1B0GUS4 154 aa11.96□□□□□ -0.49
SHH-205ENST00000472308 RNF222A6NCQ9 220 aa11.96□□□□□ -0.49
SHH-205ENST00000472308 FBLL1A6NHQ2 334 aaKnown RBP11.96□□□□□ -0.49
SHH-205ENST00000472308 DEDD2Q8WXF8 326 aa11.96□□□□□ -0.49
SHH-205ENST00000472308 PHYHIPLQ96FC7 376 aa11.96□□□□□ -0.49
SHH-205ENST00000472308 NAGKQ9UJ70 344 aa11.96□□□□□ -0.49
SHH-205ENST00000472308 NBEAP1P0C6P0 100 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 BAXQ07812 192 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 RHOHQ15669 191 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 Q8N976 141 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 CHAC2Q8WUX2 184 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 DNAJC30Q96LL9 226 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 C11orf1Q9H5F2 150 aa11.95□□□□□ -0.5
SHH-205ENST00000472308 TRBV6-4A0A1B0GX49 114 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 RBAKDNA6NC62 111 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 CAV2P51636 162 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 MIR17HGQ75NE6 70 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 ATP6V0E2Q8NHE4 81 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 FXYD5Q96DB9 178 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 PRADC1Q9BSG0 188 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 C20orf85Q9H1P6 137 aa11.94□□□□□ -0.5
SHH-205ENST00000472308 FAM24AA6NFZ4 105 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 L7N2F9 121 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 NDUFB6O95139 128 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 TYMSP04818 313 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 VAMP2P63027 116 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 CFAP126Q5VTH2 177 aa11.93□□□□□ -0.5
SHH-205ENST00000472308 DPPA3Q6W0C5 159 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms