RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HSPB11Q9Y547 144 aa11.42□□□□□ -0.58
CCDC28B-204ENST00000469003 CDK2AP2O75956 126 aa11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 MPC2O95563 127 aa11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 PET100P0DJ07 73 aa11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 RANP62826 216 aaKnown RBP11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 FFAR4Q5NUL3 377 aa11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 MRPL16Q9NX20 251 aaKnown RBP11.41□□□□□ -0.58
CCDC28B-204ENST00000469003 A6NHS1 94 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 PAX4O43316 350 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 UBE2L3P68036 154 aaKnown RBP11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 ZNF415Q09FC8 603 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 ZNF266Q14584 549 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 KHDC3LQ587J8 217 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 PTTG2Q9NZH5 202 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 ICOSQ9Y6W8 199 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 HSPG2P98160 4391 aa11.4□□□□□ -0.58
CCDC28B-204ENST00000469003 LRP1BQ9NZR2 4599 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 SSNA1O43805 119 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 IFNA5P01569 189 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 IGHV3-53P01767 116 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 RPL12P30050 165 aaKnown RBP11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 TAS2R45P59539 299 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 SLAQ13239 276 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 SPATA12Q7Z6I5 190 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 SCGB1C1Q8TD33 95 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 PRO0255Q9UI72 69 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 LENEPQ9Y5L5 61 aa11.39□□□□□ -0.59
CCDC28B-204ENST00000469003 DIRC3C9JPN6 131 aa11.38□□□□□ -0.59
CCDC28B-204ENST00000469003 DEFA1P59665 94 aa11.38□□□□□ -0.59
CCDC28B-204ENST00000469003 DEFA3P59666 94 aa11.38□□□□□ -0.59
CCDC28B-204ENST00000469003 SMIM3Q9BZL3 60 aa11.38□□□□□ -0.59
CCDC28B-204ENST00000469003 SIVA1O15304 175 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 CRYBA4P53673 196 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 FHL2Q14192 279 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 MUC21Q5SSG8 566 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 Q6AWC8 147 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 MBD2Q9UBB5 411 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 HHLA3Q9XRX5 114 aa11.37□□□□□ -0.59
CCDC28B-204ENST00000469003 NXPH4O95158 308 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 LINC00315P59091 139 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 MAPKAPK5-AS1Q8N8E1 139 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 TMED6Q8WW62 240 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 C8orf49Q96NF6 230 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 OTORQ9NRC9 128 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 MDFICQ9P1T7 246 aa11.36□□□□□ -0.59
CCDC28B-204ENST00000469003 MRPL23Q16540 153 aaKnown RBP11.35□□□□□ -0.59
CCDC28B-204ENST00000469003 FAM159AQ6UWV7 190 aa11.35□□□□□ -0.59
CCDC28B-204ENST00000469003 HYLS1Q96M11 299 aa11.35□□□□□ -0.59
CCDC28B-204ENST00000469003 SPXQ9BT56 116 aa11.35□□□□□ -0.59
CCDC28B-204ENST00000469003 WFDC1Q9HC57 220 aa11.35□□□□□ -0.59
CCDC28B-204ENST00000469003 TRGV11A0A075B6L2 103 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 TRGV4A0A0C4DH28 118 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 PGPA6NDG6 321 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 EIF3GO75821 320 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 KRTAP10-2P60368 255 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 TMEM183BQ1AE95 376 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 ACOT6Q3I5F7 207 aaPredicted RBP11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 FAM74A1Q5RGS3 127 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 LYPD5Q6UWN5 251 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 PQLC2Q6ZP29 291 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 Q6ZRN7 208 aaPredicted RBP11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 IQCF2Q8IXL9 164 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 TMEM183AQ8IXX5 376 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 ARL6IP6Q8N6S5 226 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 OR10G4Q8NGN3 311 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 CMTM2Q8TAZ6 248 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 RASL10AQ92737 203 aa11.34□□□□□ -0.59
CCDC28B-204ENST00000469003 TDRG1Q3Y452 100 aa11.33□□□□□ -0.6
CCDC28B-204ENST00000469003 NEGR1Q7Z3B1 354 aa11.33□□□□□ -0.6
CCDC28B-204ENST00000469003 HERC1Q15751 4861 aa11.32□□□□□ -0.6
CCDC28B-204ENST00000469003 A0A1W2PPV4 95 aa11.32□□□□□ -0.6
CCDC28B-204ENST00000469003 SFTA3P0C7M3 94 aa11.32□□□□□ -0.6
CCDC28B-204ENST00000469003 ZNF479Q96JC4 524 aa11.32□□□□□ -0.6
CCDC28B-204ENST00000469003 RPH3ALQ9UNE2 315 aa11.32□□□□□ -0.6
CCDC28B-204ENST00000469003 K7EQD1 137 aa11.31□□□□□ -0.6
CCDC28B-204ENST00000469003 RAB2AP61019 212 aa11.31□□□□□ -0.6
CCDC28B-204ENST00000469003 GOLT1AQ6ZVE7 132 aa11.31□□□□□ -0.6
CCDC28B-204ENST00000469003 NAGKQ9UJ70 344 aa11.31□□□□□ -0.6
CCDC28B-204ENST00000469003 APOBP04114 4563 aaKnown RBP11.31□□□□□ -0.6
CCDC28B-204ENST00000469003 TRAV21A0A0B4J279 112 aa11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 ORM1P02763 201 aa11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 SRIP30626 198 aa11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 OR10G9Q8NGN4 311 aa11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 OR10G7Q8NGN6 311 aa11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 PCNPQ8WW12 178 aaKnown RBP11.3□□□□□ -0.6
CCDC28B-204ENST00000469003 TRAV4A0A0B4J268 109 aa11.29□□□□□ -0.6
CCDC28B-204ENST00000469003 IGHV3-16A0A0C4DH30 117 aa11.29□□□□□ -0.6
CCDC28B-204ENST00000469003 GYPEP15421 78 aa11.29□□□□□ -0.6
CCDC28B-204ENST00000469003 TVP23CQ96ET8 276 aa11.29□□□□□ -0.6
CCDC28B-204ENST00000469003 DNAH5Q8TE73 4624 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 DMBT1Q9UGM3 2413 aaPredicted RBP11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 TRAV9-2A0A087WT02 112 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 TRAV8-1A0A0A6YYK1 113 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 F6UZH7 168 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 M0R2P5 195 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 HMGB3O15347 200 aaKnown RBP11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 GNRH2O43555 120 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 NFE4Q86UQ8 179 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 Q8N1X5 172 aa11.28□□□□□ -0.6
CCDC28B-204ENST00000469003 TREM1Q9NP99 234 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms