RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GOLT1AQ6ZVE7 132 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 TMEM256Q8N2U0 113 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 Q8TAT8 98 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 C20orf144Q9BQM9 153 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 NKX6-2Q9C056 277 aaPredicted RBP8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 BOLA1Q9Y3E2 137 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 ARL2-SNX15V9GYD0 113 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 TRBV7-9A0A0J9YWB2 115 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 SMIM9A6NGZ8 99 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 KLLNB2CW77 178 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 IGLL5B9A064 214 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 C11orf94C9JXX5 98 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 NMBP08949 121 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 CRISP2P16562 243 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 GFI1BQ5VTD9 330 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 ALKAL2Q6UX46 152 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 Q8N1X5 172 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 TMEM208Q9BTX3 173 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 EPDR1Q9UM22 224 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 LENEPQ9Y5L5 61 aa8.52□□□□□ -1.05
SQSTM1-206ENST00000466342 TRAV1-1A0A0B4J248 108 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 A0A1B0GV50 99 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 TEX46H3BTG2 121 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 J3KRW8 73 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 K7EQM0 130 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 HBE1P02100 147 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 PPT1P50897 306 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 ZFAND2AQ8N6M9 145 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 CYB561D1Q8N8Q1 229 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 ATG101Q9BSB4 218 aa8.51□□□□□ -1.05
SQSTM1-206ENST00000466342 TRAV8-1A0A0A6YYK1 113 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 C7orf71A4D174 169 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 H7BYZ3 331 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 PAGE4O60829 102 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 IFNA7P01567 189 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 GPX1P07203 203 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 RRN3P1Q2M238 152 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 CST9LP1Q5W188 147 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 CCDC28AQ8IWP9 274 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 TCEAL7Q9BRU2 100 aa8.5□□□□□ -1.05
SQSTM1-206ENST00000466342 TRAV12-3A0A0B4J271 114 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 FBLL1A6NHQ2 334 aaKnown RBP8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 M0R2N4 97 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 PEX7O00628 323 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 ATP5G3P48201 142 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 TAS2R60P59551 318 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 BTN1A1Q13410 526 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 PRR9Q5T870 116 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 TMEM75Q8N9X5 138 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 HIST1H2BAQ96A08 127 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 LINC01587Q99440 93 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 NIPSNAP3BQ9BS92 247 aa8.49□□□□□ -1.05
SQSTM1-206ENST00000466342 TRAV10A0A0B4J240 114 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 LOC102723971A0A1B0GUV8 181 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 TMEM189A5PLL7 270 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 ZNF705GA8MUZ8 300 aaPredicted RBP8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 IGLV2-11P01706 119 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 RNASE4P34096 147 aaKnown RBP8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 CCL20P78556 96 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 FLI1Q01543 452 aaPredicted RBP8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 SGK494Q96LW2 274 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 PYGO2Q9BRQ0 406 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 NDFIP1Q9BT67 221 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 SCRT2Q9NQ03 307 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 MANBALQ9NQG1 85 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 GNG13Q9P2W3 67 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 PSG8Q9UQ74 426 aa8.48□□□□□ -1.05
SQSTM1-206ENST00000466342 DMBT1Q9UGM3 2413 aaPredicted RBP8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 F6UZH7 168 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 ZNF324O75467 553 aaPredicted RBP8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 PRM2P04554 102 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 BLOC1S1P78537 153 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 LGALS9BQ3B8N2 356 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 Q6ZTC4 211 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 POM121L12Q8N7R1 296 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 TVP23CQ96ET8 276 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 TREM1Q9NP99 234 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 LRP1BQ9NZR2 4599 aa8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 APOBP04114 4563 aaKnown RBP8.47□□□□□ -1.05
SQSTM1-206ENST00000466342 IFNA1P01562 189 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 HTN1P15515 57 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 AZU1P20160 251 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 C12orf74Q32Q52 190 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 Q6AWC8 147 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 PRNTQ86SH4 94 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 RNASE8Q8TDE3 154 aaKnown RBP8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 TMEM263Q8WUH6 116 aaKnown RBP8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 C16orf74Q96GX8 76 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 LINC00479Q96M42 142 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 LINC00467Q9BRT7 94 aa8.46□□□□□ -1.06
SQSTM1-206ENST00000466342 TRAV34A0A0B4J273 112 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 PLAC8L1A1L4L8 177 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 SPART-AS1P0CW21 52 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 EMP1P54849 157 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 SAPCD1Q5SSQ6 148 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 Q6ZQT7 251 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 ZNF493Q6ZR52 646 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 Q86TA4 180 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 LYPD6BQ8NI32 183 aa8.45□□□□□ -1.06
SQSTM1-206ENST00000466342 FMC1Q96HJ9 113 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms