RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 RNF24Q9Y225 148 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 DUXBA0A1W2PPF3 345 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 FAM168BA1KXE4 195 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 GAGE12HA6NDE8 117 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 SNTNA6NMZ2 147 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 DIRC3C9JPN6 131 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 NUPR1O60356 82 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 APOMO95445 188 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 PTTG1O95997 202 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 SNRPCP09234 159 aaKnown RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 RAP2AP10114 183 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 ANXA7P20073 488 aaKnown RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 MAPK3P27361 379 aaPredicted RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 S100GP29377 79 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 RANBP1P43487 201 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 WNT4P56705 351 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 RAP2BP61225 183 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 RBX1P62877 108 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 TRIM16LQ309B1 348 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 C1orf100Q5SVJ3 147 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 TMEM17Q86X19 198 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 OR2T35Q8NGX2 323 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 MRGPRFQ96AM1 343 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 SMIM19Q96E16 107 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 C20orf166-AS1Q96NR2 134 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 TRGV9Q99603 122 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 MAGIXQ9H6Y5 334 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 AUNIPQ9H7T9 357 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 HEYLQ9NQ87 328 aaPredicted RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 ARGLU1Q9NWB6 273 aaPredicted RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 NAGKQ9UJ70 344 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 PXMP4Q9Y6I8 212 aa1.33□□□□□ -2.2
USP40-211ENST00000464956 FLGP20930 4061 aaPredicted RBP1.33□□□□□ -2.2
USP40-211ENST00000464956 IGKV1D-37A0A075B6S9 117 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 RBAKDNA6NC62 111 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 PMS2P5A8MQ11 134 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 H3BRN7 92 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 J3QRE1 110 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ZNF561-AS1K7EIQ3 104 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 M0QXV9 152 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 PGLYRP1O75594 196 aaPredicted RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 SPINK1P00995 79 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 BCL2P10415 239 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 HIST1H1DP16402 221 aaKnown RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 PRKACGP22612 351 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 SULT1A2P50226 295 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 TAS2R20P59543 309 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 SPCS3P61009 180 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 HERV-K104P61576 105 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 RPL36AP83881 106 aaKnown RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 ERCC8Q13216 396 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ARL6IP1Q15041 203 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 WHAMMP3Q1A5X7 153 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ZFP69Q49AA0 526 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ZNF506Q5JVG8 444 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 TMEM78Q5T7P6 136 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ZFP2Q6ZN57 461 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 FAM19A5Q7Z5A7 132 aaPredicted RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 ZFAND2AQ8N6M9 145 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 OR10R2Q8NGX6 335 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 OR1S1Q8NH92 325 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 RPL36ALQ969Q0 106 aaKnown RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 LINC00526Q96FQ7 95 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 FAM19A4Q96LR4 140 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ZNF2Q9BSG1 426 aaPredicted RBP1.32□□□□□ -2.2
USP40-211ENST00000464956 EFCAB1Q9HAE3 211 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 PLGRKTQ9HBL7 147 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 NPVFQ9HCQ7 196 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 AMBNQ9NP70 447 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 FGFR1OP2Q9NVK5 253 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 MGAT4CQ9UBM8 478 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 ANXA10Q9UJ72 324 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 RAB21Q9UL25 225 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 HIGD1AQ9Y241 93 aa1.32□□□□□ -2.2
USP40-211ENST00000464956 A0A0G2JND7 137 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 LOC100506127A0A0U1RQW1 187 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 RGS10O43665 173 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 SLC25A20O43772 301 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 HIST1H1EP10412 219 aaKnown RBP1.31□□□□□ -2.2
USP40-211ENST00000464956 PTMSP20962 102 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 GPX4P36969 197 aaPredicted RBP1.31□□□□□ -2.2
USP40-211ENST00000464956 AKR1C2P52895 323 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 RPS11P62280 158 aaKnown RBP eCLIP1.31□□□□□ -2.2
USP40-211ENST00000464956 RPS25P62851 125 aaKnown RBP1.31□□□□□ -2.2
USP40-211ENST00000464956 GAGE6Q13070 117 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 SURF2Q15527 256 aaPredicted RBP1.31□□□□□ -2.2
USP40-211ENST00000464956 TRAM1Q15629 374 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 IZUMO4Q1ZYL8 232 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 TMEM97Q5BJF2 176 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 PRR9Q5T870 116 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 XAF1Q6GPH4 301 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 KRTAP5-3Q6L8H2 238 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 CYP2R1Q6VVX0 501 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 TMPRSS11AQ6ZMR5 421 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 HS3ST5Q8IZT8 346 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 TMEM252Q8N6L7 170 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 C14orf178Q8N769 122 aaPredicted RBP1.31□□□□□ -2.2
USP40-211ENST00000464956 BEST4Q8NFU0 473 aa1.31□□□□□ -2.2
USP40-211ENST00000464956 MGLLQ99685 303 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms