RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 RNASE6Q93091 150 aaKnown RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 UBE2WQ96B02 151 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 BTF3L4Q96K17 158 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 IGF2BP2-AS1Q96M15 143 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 TP53RKQ96S44 253 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 TXNDC17Q9BRA2 123 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 GINS3Q9BRX5 216 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 PSMG3Q9BT73 122 aaPredicted RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 GGACTQ9BVM4 153 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 PARD6GQ9BYG4 376 aaPredicted RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 EIF5A2Q9GZV4 153 aaKnown RBP2.09□□□□□ -2.07
VPS41-210ENST00000462429 SLC39A9Q9NUM3 307 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 PSENENQ9NZ42 101 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 OR5AC2Q9NZP5 309 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 PRNDQ9UKY0 176 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 TIMM9Q9Y5J7 89 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 FAM215AQ9Y5M1 114 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 LINC00312Q9Y6C7 94 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 U3KQK5 164 aa2.09□□□□□ -2.07
VPS41-210ENST00000462429 INTS1Q8N201 2190 aaKnown RBP2.09□□□□□ -2.08
VPS41-210ENST00000462429 BDP1A6H8Y1 2624 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 CNOT1A5YKK6 2376 aaKnown RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 VCANP13611 3396 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 TRAV1-1A0A0B4J248 108 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 A0A1B0GW64 132 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 TMEM218A2RU14 115 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 B4DEV8 164 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 ATP6V1G2-DDX39BF2Z307 99 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 FNDC10F2Z333 226 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 ZNF737O75373 536 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 IFNA10P01566 189 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 RBP4P02753 201 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 NFYBP25208 207 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 S100A7P31151 101 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 SNCAP37840 140 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 POLR2GP62487 172 aaKnown RBP eCLIP2.08□□□□□ -2.08
VPS41-210ENST00000462429 BSPH1Q075Z2 132 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 SRSF6Q13247 344 aaKnown RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 RHEBQ15382 184 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 ACOT6Q3I5F7 207 aaPredicted RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 KHDC3LQ587J8 217 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 SPANXN5Q5MJ07 72 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 NCMAPQ5T1S8 102 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 RPL7L1Q6DKI1 246 aaKnown RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 ZFAND6Q6FIF0 208 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 HEPN1Q6WQI6 88 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 ZNF826PQ6ZT77 177 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 OR4P4Q8NGL7 312 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 OR10X1Q8NGY0 326 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 DTD1Q8TEA8 209 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 SFT2D1Q8WV19 159 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 GPR146Q96CH1 333 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 ZNF714Q96N38 554 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 TMEM147Q9BVK8 224 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 SMIM3Q9BZL3 60 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 NKX6-2Q9C056 277 aaPredicted RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 SLC35B3Q9H1N7 401 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 NPVFQ9HCQ7 196 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 C19orf12Q9NSK7 152 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 TMEM106BQ9NUM4 274 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 UQCC1Q9NVA1 299 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 IDI2-AS1Q9NZ38 188 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 KAAG1Q9UBP8 84 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 AMMECR1Q9Y4X0 333 aaPredicted RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 RIF1Q5UIP0 2472 aaKnown RBP2.08□□□□□ -2.08
VPS41-210ENST00000462429 TTC28Q96AY4 2481 aa2.08□□□□□ -2.08
VPS41-210ENST00000462429 COL6A3P12111 3177 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 IGHV1-69-2A0A0G2JMI3 117 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 DPRXA6NFQ7 191 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 FAM24AA6NFZ4 105 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 C15orf65H3BRN8 121 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 CORTO00230 105 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 TGOLN2O43493 480 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 CST7O76096 145 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 GYPAP02724 150 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 IFNA4P05014 189 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 FABP1P07148 127 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 ATP6V0CP27449 155 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 G6PCP35575 357 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 PPP1CCP36873 323 aaKnown RBP2.07□□□□□ -2.08
VPS41-210ENST00000462429 PSMB3P49720 205 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 DYNLT3P51808 116 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 TAS2R45P59539 299 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 HSPE1P61604 102 aaKnown RBP2.07□□□□□ -2.08
VPS41-210ENST00000462429 CCL8P80075 99 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 SLC38A11Q08AI6 406 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 ESPL1Q14674 2120 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 GUK1Q16774 197 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 LRRC75BQ2VPJ9 315 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 VMA21Q3ZAQ7 101 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 TMEM155Q4W5P6 130 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 FAM74A1Q5RGS3 127 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 SPNS3Q6ZMD2 512 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 LRP11Q86VZ4 500 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 LINC00311Q8N616 119 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 FER1L6-AS1Q8NA97 138 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 OR8B3Q8NGG8 313 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 OR13D1Q8NGV5 346 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 LHFPL5Q8TAF8 219 aa2.07□□□□□ -2.08
VPS41-210ENST00000462429 FAM213BQ8TBF2 198 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms