RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 RAI1Q7Z5J4 1906 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-216ENST00000461872 G3V4G9 280 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 C11orf68Q9H3H3 251 aaKnown RBP5.56□□□□□ -1.52
SYNE1-216ENST00000461872 TP53TG3Q9ULZ0 132 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 MUC6Q6W4X9 2439 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 FAM201AQ5SY85 155 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 C10orf126Q8N4M7 172 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 PGPEP1Q9NXJ5 209 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 TRBV25-1A0A075B6N4 114 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 GTSF1Q8WW33 167 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 TMEM89A2RUT3 159 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 UBE2L6O14933 153 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 MRPL23Q16540 153 aaKnown RBP5.56□□□□□ -1.52
SYNE1-216ENST00000461872 LY6G5BQ8NDX9 201 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 FAM215AQ9Y5M1 114 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 ATP5G1P05496 136 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 SPG11Q96JI7 2443 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV3-7A0A075B6H7 116 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 TMEM101Q96IK0 257 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 PRO1854Q9UHT4 67 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 TDRG1Q3Y452 100 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 K7EIM0 57 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 IGHG4P01861 327 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 PEMTQ9UBM1 199 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 NPYP01303 97 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 Q71RC1 249 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-216ENST00000461872 C9orf47Q6ZRZ4 202 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 IGHV3-48P01763 117 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 APELAP0DMC3 54 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 ODF3Q96PU9 254 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 BDP1A6H8Y1 2624 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 SSBP2P81877 361 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-216ENST00000461872 DTX2Q86UW9 622 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 RNASE8Q8TDE3 154 aaKnown RBP5.55□□□□□ -1.52
SYNE1-216ENST00000461872 A0A1W2PRD5 423 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 A0A1W2PRF3 423 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 A0A1W2PRM7 423 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 PRSS57Q6UWY2 283 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 TP73-AS1Q9UF72 201 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV1D-37A0A075B6S9 117 aa5.55□□□□□ -1.52
SYNE1-216ENST00000461872 PRSS2P07478 247 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 TMEM105Q8N8V8 129 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 PROP1O75360 226 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 TET2Q6N021 2002 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 WT1P19544 449 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 UTF1Q5T230 341 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 TRAV8-4A0A0B4J246 113 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 CSPG4Q6UVK1 2322 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 A0A0G2JNJ9 132 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 NPFFO15130 113 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 GTSCR1Q86UQ5 136 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 ZNF418Q8TF45 676 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 Q9UFV3 132 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV2-40A0A087WW87 121 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 TRAV8-2A0A0B4J237 113 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV2D-40P01614 121 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 IGLC6P0CF74 106 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 ODF1Q14990 250 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 ATP1A1-AS1Q5TC04 95 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 IGHV4-4A0A075B6R2 117 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 FAM168AQ92567 244 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 SPINK8P0C7L1 97 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 HOXB4P17483 251 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-216ENST00000461872 C12orf74Q32Q52 190 aa5.54□□□□□ -1.52
SYNE1-216ENST00000461872 E9PLD3 99 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 COL8A2P25067 703 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 IGLL5B9A064 214 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 SNAI2O43623 268 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 CLEC19AQ6UXS0 136 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 MRPL35Q9NZE8 188 aaKnown RBP5.53□□□□□ -1.52
SYNE1-216ENST00000461872 TEX22C9J3V5 150 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 C7orf69Q9H7B7 122 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 IGHV1-69P01742 117 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 FAM120AOSQ5T036 256 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 H3BT86 120 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 I3L3M4 83 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 M0QXV9 152 aa5.53□□□□□ -1.52
SYNE1-216ENST00000461872 LGALS1P09382 135 aaKnown RBP5.53□□□□□ -1.52
SYNE1-216ENST00000461872 A0A0J9YXY3 114 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 H3BQ85 93 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 TIMM21Q9BVV7 248 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 NCR2O95944 276 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 LINC00310P59036 64 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 TOMM6Q96B49 74 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 C8orf86Q6ZUL3 223 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 CRYGBP07316 175 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 SPANXB1Q9NS25 103 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-216ENST00000461872 CEP295Q9C0D2 2601 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 SDHAF1A6NFY7 115 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 EBI3Q14213 229 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 FAM208BQ5VWN6 2430 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 TRAV40A0A0B4J280 105 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RBMY1BA6NDE4 496 aaKnown RBP5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RBMY1EA6NEQ0 496 aaKnown RBP5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RBMY1DP0C7P1 496 aaKnown RBP5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RBMY1A1P0DJD3 496 aaKnown RBP5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RBMY1CP0DJD4 496 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 RASL10AQ92737 203 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 ETDBQ3ZM63 59 aa5.52□□□□□ -1.53
SYNE1-216ENST00000461872 TMEM213A2RRL7 107 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms