RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZNF253O75346 499 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 PRB4P10163 310 aaPredicted RBP5.04□□□□□ -1.6
USP54-208ENST00000461520 S100A11P31949 105 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 RPL29P47914 159 aaKnown RBP5.04□□□□□ -1.6
USP54-208ENST00000461520 SULT1A1P50225 295 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 VWC2Q2TAL6 325 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 MIC13Q5XKP0 118 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 C12orf45Q8N5I9 185 aaPredicted RBP5.04□□□□□ -1.6
USP54-208ENST00000461520 LINC00612Q8N6U2 182 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 C2orf50Q96LR7 162 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 C11orf1Q9H5F2 150 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 LYRM2Q9NU23 88 aaPredicted RBP5.04□□□□□ -1.6
USP54-208ENST00000461520 NUDT15Q9NV35 164 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 UQCC1Q9NVA1 299 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 NDUFA13Q9P0J0 144 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 WDR83OSQ9Y284 106 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 LINC00588Q9Y4M8 146 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 LRP1BQ9NZR2 4599 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 TRAV6A0A075B6T7 132 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 TRAV5A0A0B4J249 113 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 SNURFLB1AK76 121 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 H3BNG1 76 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 H3BTX0 84 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 CST7O76096 145 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 RLN2P04090 185 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 CT45A10P0DMU9 189 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 LEPP41159 167 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 HBG1P69891 147 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 HBG2P69892 147 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 IL15RAQ13261 267 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 CLINT1Q14677 625 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 ATP6V1FQ16864 119 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 STX12Q86Y82 276 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 C6orf223Q8N319 242 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 TMEM252Q8N6L7 170 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 GNPNAT1Q96EK6 184 aaPredicted RBP5.03□□□□□ -1.6
USP54-208ENST00000461520 MRPL53Q96EL3 112 aaKnown RBP5.03□□□□□ -1.6
USP54-208ENST00000461520 SEC22CQ9BRL7 303 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 PYGO2Q9BRQ0 406 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 CCDC32Q9BV29 185 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 PARD6GQ9BYG4 376 aaPredicted RBP5.03□□□□□ -1.6
USP54-208ENST00000461520 SLC39A9Q9NUM3 307 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 TMEM14CQ9P0S9 112 aa5.03□□□□□ -1.6
USP54-208ENST00000461520 HERC1Q15751 4861 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 NACAE9PAV3 2078 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 TRBV19A0A075B6N1 114 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 TRAV26-1A0A087WT03 109 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 UBE2L5PA0A1B0GUS4 154 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 MPDU1O75352 247 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 M6PRP20645 277 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 S100A10P60903 97 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 BAXQ07812 192 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 DAZ2Q13117 558 aaKnown RBP5.02□□□□□ -1.61
USP54-208ENST00000461520 OR5I1Q13606 314 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 PDE6HQ13956 83 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 SSX7Q7RTT5 188 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 RXFP4Q8TDU9 374 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 LINC00477Q96M19 166 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 Q9H8V8 135 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 ZNF586Q9NXT0 402 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 PRELID1Q9Y255 219 aa5.02□□□□□ -1.61
USP54-208ENST00000461520 APOBP04114 4563 aaKnown RBP5.01□□□□□ -1.61
USP54-208ENST00000461520 TRAV12-3A0A0B4J271 114 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 FAM240BA0A1B0GVZ2 78 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 IGSF23A1L1A6 192 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 KLLNB2CW77 178 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 J3KRW8 73 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 GAGE7O76087 117 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 SLC25A5P05141 298 aaKnown RBP5.01□□□□□ -1.61
USP54-208ENST00000461520 GAGE12FP0CL80 117 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 GAGE12GP0CL81 117 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 GAGE12IP0CL82 117 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 HIST1H1EP10412 219 aaKnown RBP5.01□□□□□ -1.61
USP54-208ENST00000461520 FGF7P21781 194 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 TTC32Q5I0X7 151 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 LINC00299Q6ZSB3 139 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 ZNF680Q8NEM1 530 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 FAM19A4Q96LR4 140 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 C18orf15Q96N68 181 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 LINC00467Q9BRT7 94 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 UPK3BQ9BT76 320 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 TIMM9Q9Y5J7 89 aa5.01□□□□□ -1.61
USP54-208ENST00000461520 DNAH5Q8TE73 4624 aa5□□□□□ -1.61
USP54-208ENST00000461520 A0A0J9YY99 117 aa5□□□□□ -1.61
USP54-208ENST00000461520 A0A1W2PPQ1 181 aa5□□□□□ -1.61
USP54-208ENST00000461520 C7orf71A4D174 169 aa5□□□□□ -1.61
USP54-208ENST00000461520 C16orf90A8MZG2 172 aa5□□□□□ -1.61
USP54-208ENST00000461520 M0R3E3 92 aa5□□□□□ -1.61
USP54-208ENST00000461520 ZNF324O75467 553 aaPredicted RBP5□□□□□ -1.61
USP54-208ENST00000461520 NDUFB4O95168 129 aa5□□□□□ -1.61
USP54-208ENST00000461520 NMBP08949 121 aa5□□□□□ -1.61
USP54-208ENST00000461520 CRISP2P16562 243 aa5□□□□□ -1.61
USP54-208ENST00000461520 MZT2BQ6NZ67 158 aa5□□□□□ -1.61
USP54-208ENST00000461520 EIF4E3Q8N5X7 224 aaKnown RBP5□□□□□ -1.61
USP54-208ENST00000461520 MAPKAPK5-AS1Q8N8E1 139 aa5□□□□□ -1.61
USP54-208ENST00000461520 C11orf72Q8NBR9 251 aa5□□□□□ -1.61
USP54-208ENST00000461520 NPCDR1Q9BY65 106 aa5□□□□□ -1.61
USP54-208ENST00000461520 AGPAT4-IT1Q9H0P7 198 aa5□□□□□ -1.61
USP54-208ENST00000461520 Q9H3A6 140 aa5□□□□□ -1.61
USP54-208ENST00000461520 GPN1Q9HCN4 374 aaPredicted RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms