RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LINC01549A6NIU2 74 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 J3KRW8 73 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 ANXA2RQ3ZCQ2 193 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 SMAD5-AS1Q9Y6J3 95 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 PRSS29PA6NIE9 313 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 DEFB109BQ30KR1 87 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 MYOZ3Q8TDC0 251 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 KIR2DL4Q99706 377 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 NXT2Q9NPJ8 142 aaKnown RBP9.07□□□□□ -0.96
CPSF3-202ENST00000460593 IGLV2-18A0A075B6J9 118 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 IGHV3-49A0A0A0MS15 119 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 EMP1P54849 157 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 LYPD1Q8N2G4 141 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 ZNF502Q8TBZ5 544 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 PIFOQ8TCI5 191 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 PLEKHB2Q96CS7 222 aa9.07□□□□□ -0.96
CPSF3-202ENST00000460593 TRAV17A0A0B4J275 112 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 MBD3L4A6NDZ8 208 aaPredicted RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 MBD3L3A6NE82 208 aaPredicted RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 MBD3L5A6NJ08 208 aaPredicted RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 CEACAM4O75871 244 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 C3orf36Q3SXR2 165 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 MBD3L2Q8NHZ7 208 aaPredicted RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 NCBP2LA6PVI3 153 aaKnown RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 BUB1B-PAK6H3BSN5 160 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 TIMM23O14925 209 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 ATP5LO75964 103 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 TCTEX1D4Q5JR98 221 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 KLHL30-AS1Q8NEE0 82 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 HOXA3O43365 443 aaPredicted RBP9.06□□□□□ -0.96
CPSF3-202ENST00000460593 BSPH1Q075Z2 132 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 Q8N8P6 123 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 VKORC1Q9BQB6 163 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 ZFHX3Q15911 3703 aa9.06□□□□□ -0.96
CPSF3-202ENST00000460593 NBASA2RRP1 2371 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 IGKV3D-20A0A0C4DH25 116 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 H3BVH4 76 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 C1QTNF4Q9BXJ3 329 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 ACACAQ13085 2346 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 A0A087WX48 190 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 CDX4O14627 284 aaPredicted RBP9.05□□□□□ -0.96
CPSF3-202ENST00000460593 HES1Q14469 280 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 CFAP126Q5VTH2 177 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 ONECUT1Q9UBC0 465 aa9.05□□□□□ -0.96
CPSF3-202ENST00000460593 F8W735 103 aaPredicted RBP9.04□□□□□ -0.96
CPSF3-202ENST00000460593 IGLV1-47P01700 117 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 LGALS1P09382 135 aaKnown RBP9.04□□□□□ -0.96
CPSF3-202ENST00000460593 LAGE3Q14657 143 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 Q6ZUT4 128 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 PSMG3-AS1Q96PY0 264 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 SPTBN1Q01082 2364 aaKnown RBP9.04□□□□□ -0.96
CPSF3-202ENST00000460593 MYMXA0A1B0GTQ4 84 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 OR11H12B2RN74 326 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 OR11H1Q8NG94 326 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 OR11H2Q8NH07 326 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 TMEM238LA0A1B0GVL6 79 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 FABP5P3A8MUU1 101 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 SHISA9B4DS77 424 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 NRACQ8N912 160 aa9.04□□□□□ -0.96
CPSF3-202ENST00000460593 VSTM5A8MXK1 200 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 SRSF1Q07955 248 aaKnown RBP eCLIP9.03□□□□□ -0.96
CPSF3-202ENST00000460593 FANCD2OSQ96PS1 177 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 BDP1A6H8Y1 2624 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 BSNQ9UPA5 3926 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 FAM90A27PA6NNH2 459 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 TNFRSF13BO14836 293 aaPredicted RBP9.03□□□□□ -0.96
CPSF3-202ENST00000460593 TSPAN13O95857 204 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 NDPQ00604 133 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 KLRD1Q13241 179 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 TMEM78Q5T7P6 136 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 SCGB1D4Q6XE38 83 aa9.03□□□□□ -0.96
CPSF3-202ENST00000460593 SLC25A16P16260 332 aa9.02□□□□□ -0.96
CPSF3-202ENST00000460593 SRSF9Q13242 221 aaKnown RBP eCLIP9.02□□□□□ -0.96
CPSF3-202ENST00000460593 DYNLRB1Q9NP97 96 aa9.02□□□□□ -0.96
CPSF3-202ENST00000460593 ANKRD11Q6UB99 2663 aaPredicted RBP9.02□□□□□ -0.97
CPSF3-202ENST00000460593 ZNF815PA8K554 130 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 ZNF48Q96MX3 618 aaPredicted RBP9.02□□□□□ -0.97
CPSF3-202ENST00000460593 PRADC1Q9BSG0 188 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 RAXQ9Y2V3 346 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 LINC01546A6NGU7 62 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 THBDP07204 575 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 PDE6HQ13956 83 aa9.02□□□□□ -0.97
CPSF3-202ENST00000460593 DLX4Q92988 240 aaPredicted RBP9.02□□□□□ -0.97
CPSF3-202ENST00000460593 RPL39LQ96EH5 51 aaKnown RBP9.02□□□□□ -0.97
CPSF3-202ENST00000460593 LY6HO94772 140 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 IGF1P05019 195 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 MFAP4P55083 255 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 SPANXN1Q5VSR9 72 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 C8orf31Q8N9H6 132 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 SCGB3A1Q96QR1 104 aa9.01□□□□□ -0.97
CPSF3-202ENST00000460593 F8VRH5 84 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 RPL7P18124 248 aaKnown RBP9□□□□□ -0.97
CPSF3-202ENST00000460593 DEFB1P60022 68 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 TAL2Q16559 108 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 C21orf62Q9NYP8 219 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 AKAP13Q12802 2813 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 H7C1H1 209 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 TCL1BO95988 128 aa9□□□□□ -0.97
CPSF3-202ENST00000460593 RNASE6Q93091 150 aaKnown RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms