RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 NUTF2P61970 127 aaKnown RBP12.71□□□□□ -0.37
CCDC43-202ENST00000457422 SRSF1Q07955 248 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC43-202ENST00000457422 PET117Q6UWS5 81 aa12.71□□□□□ -0.37
CCDC43-202ENST00000457422 C20orf173Q96LM9 149 aa12.71□□□□□ -0.37
CCDC43-202ENST00000457422 MAP1LC3CQ9BXW4 147 aa12.71□□□□□ -0.37
CCDC43-202ENST00000457422 NPFFR1Q9GZQ6 430 aa12.71□□□□□ -0.37
CCDC43-202ENST00000457422 OR10AG1Q8NH19 301 aa12.71□□□□□ -0.38
CCDC43-202ENST00000457422 SIGLEC8Q9NYZ4 499 aa12.71□□□□□ -0.38
CCDC43-202ENST00000457422 FBN2P35556 2912 aa12.71□□□□□ -0.38
CCDC43-202ENST00000457422 OR4C46A6NHA9 309 aa12.7□□□□□ -0.38
CCDC43-202ENST00000457422 IFI27P40305 119 aaPredicted RBP12.7□□□□□ -0.38
CCDC43-202ENST00000457422 DEFB112Q30KQ8 113 aa12.7□□□□□ -0.38
CCDC43-202ENST00000457422 TMEM95Q3KNT9 176 aa12.7□□□□□ -0.38
CCDC43-202ENST00000457422 ZNF843Q8N446 348 aa12.7□□□□□ -0.38
CCDC43-202ENST00000457422 C11orf21Q9P2W6 132 aa12.7□□□□□ -0.38
CCDC43-202ENST00000457422 IGHV4-59P01825 116 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 MAPK1IP1LQ8NDC0 245 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 RNF185Q96GF1 192 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 FAM208BQ5VWN6 2430 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 IGLL1P15814 213 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 CKS2P33552 79 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 ZNF738Q8NE65 137 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 MSRB1Q9NZV6 116 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 CSMD2Q7Z408 3487 aa12.69□□□□□ -0.38
CCDC43-202ENST00000457422 PPBPP02775 128 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 LINC00477Q96M19 166 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 ZNF747Q9BV97 191 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 ANKRD17O75179 2603 aaKnown RBP12.68□□□□□ -0.38
CCDC43-202ENST00000457422 UBR5O95071 2799 aaPredicted RBP12.68□□□□□ -0.38
CCDC43-202ENST00000457422 CSPG4Q6UVK1 2322 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 A0A096LNJ9 63 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 IGHV7-4-1A0A0J9YVY3 117 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 LOC389332A0A1B0GUA5 103 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 SMKR1H3BMG3 65 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 OVOL1O14753 267 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 LAMTOR2Q9Y2Q5 125 aa12.68□□□□□ -0.38
CCDC43-202ENST00000457422 TIMM8BQ9Y5J9 83 aaPredicted RBP12.68□□□□□ -0.38
CCDC43-202ENST00000457422 LRRK2Q5S007 2527 aa12.67□□□□□ -0.38
CCDC43-202ENST00000457422 LOXL1Q08397 574 aaPredicted RBP12.67□□□□□ -0.38
CCDC43-202ENST00000457422 FOXE3Q13461 319 aa12.67□□□□□ -0.38
CCDC43-202ENST00000457422 FAM106AQ4KMX7 169 aa12.67□□□□□ -0.38
CCDC43-202ENST00000457422 Q6ZN92 141 aa12.67□□□□□ -0.38
CCDC43-202ENST00000457422 DAZ1Q9NQZ3 744 aaKnown RBP12.67□□□□□ -0.38
CCDC43-202ENST00000457422 TGFAP01135 160 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 NPYP01303 97 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 PSMB8P28062 276 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 HNRNPA3P51991 378 aaKnown RBP12.66□□□□□ -0.38
CCDC43-202ENST00000457422 LINC01545Q5VT33 79 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 ST20Q9HBF5 79 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 TMEM89A2RUT3 159 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 K7EMT4 169 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 NCR2O95944 276 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 PRR9Q5T870 116 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 Q6ZQT7 251 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 PEF1Q9UBV8 284 aaKnown RBP12.66□□□□□ -0.38
CCDC43-202ENST00000457422 POLQO75417 2590 aa12.66□□□□□ -0.38
CCDC43-202ENST00000457422 SNAI2O43623 268 aa12.65□□□□□ -0.38
CCDC43-202ENST00000457422 TM4SF20Q53R12 229 aa12.65□□□□□ -0.38
CCDC43-202ENST00000457422 OR10J6PQ8NGY7 276 aa12.65□□□□□ -0.38
CCDC43-202ENST00000457422 RHPN1-AS1Q9BWJ2 59 aa12.65□□□□□ -0.38
CCDC43-202ENST00000457422 IGHV4-4A0A075B6R2 117 aa12.65□□□□□ -0.39
CCDC43-202ENST00000457422 LINC01546A6NGU7 62 aa12.65□□□□□ -0.39
CCDC43-202ENST00000457422 RNF223E7ERA6 249 aa12.65□□□□□ -0.39
CCDC43-202ENST00000457422 TCF21O43680 179 aa12.65□□□□□ -0.39
CCDC43-202ENST00000457422 TSPOP30536 169 aa12.65□□□□□ -0.39
CCDC43-202ENST00000457422 MRPS16Q9Y3D3 137 aaKnown RBP12.65□□□□□ -0.39
CCDC43-202ENST00000457422 USP9YO00507 2555 aaPredicted RBP12.64□□□□□ -0.39
CCDC43-202ENST00000457422 FSHBP01225 129 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 RPLP1P05386 114 aaKnown RBP12.64□□□□□ -0.39
CCDC43-202ENST00000457422 DEFB1P60022 68 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 KRTAP10-9P60411 292 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 RPL11P62913 178 aaKnown RBP12.64□□□□□ -0.39
CCDC43-202ENST00000457422 PRSS57Q6UWY2 283 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 ZFAND2AQ8N6M9 145 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 FAM19A4Q96LR4 140 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 SMPXQ9UHP9 88 aa12.64□□□□□ -0.39
CCDC43-202ENST00000457422 SELENOKQ9Y6D0 94 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 TRBV7-9A0A0J9YWB2 115 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 H0Y8G0 127 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 HBDP02042 147 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 CACNG7P62955 275 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 C10orf99Q6UWK7 81 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 APRG1Q8IVJ8 170 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 MCRIP2Q9BUT9 160 aaKnown RBP12.63□□□□□ -0.39
CCDC43-202ENST00000457422 MAP1LC3AQ9H492 121 aa12.63□□□□□ -0.39
CCDC43-202ENST00000457422 IGKV3-7A0A075B6H7 116 aa12.62□□□□□ -0.39
CCDC43-202ENST00000457422 J3KRW8 73 aa12.62□□□□□ -0.39
CCDC43-202ENST00000457422 EDN2P20800 178 aa12.62□□□□□ -0.39
CCDC43-202ENST00000457422 IGHV4-31P0DP07 118 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 OR8A1Q8NGG7 326 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 CR1P17927 2039 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 TRAV21A0A0B4J279 112 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 hDV102S1A0JD36 115 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 GAS8-AS1O95177 125 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 BATFQ16520 125 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 SAMD13Q5VXD3 122 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 MS4A6AQ9H2W1 248 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 BEX4Q9NWD9 120 aaPredicted RBP12.61□□□□□ -0.39
CCDC43-202ENST00000457422 ZANQ9Y493 2812 aa12.61□□□□□ -0.39
CCDC43-202ENST00000457422 CENPEQ02224 2701 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms