RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ATP5G3P48201 142 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 CCL20P78556 96 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 MEF2BQ02080 365 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-214ENST00000454018 GOLT1AQ6ZVE7 132 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 TMEM75Q8N9X5 138 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 LINC00477Q96M19 166 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 EPDR1Q9UM22 224 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 TENM3Q9P273 2699 aa6.41□□□□□ -1.38
SYNE1-214ENST00000454018 CBY3A6NI87 242 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 NMBP08949 121 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 PRB4P10163 310 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-214ENST00000454018 LEPP41159 167 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 CDKN1BP46527 198 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 LINC00310P59036 64 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 RAB14P61106 215 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 SBSPONQ8IVN8 264 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 VGLL1Q99990 258 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 AGPAT4-IT1Q9H0P7 198 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 SLC35B3Q9H1N7 401 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 ZNF492Q9P255 531 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 LENEPQ9Y5L5 61 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 NBEAL2Q6ZNJ1 2754 aa6.4□□□□□ -1.38
SYNE1-214ENST00000454018 M0R2Z0 102 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 PDE6DO43924 150 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 INSP01308 110 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 GIG44P09565 113 aaPredicted RBP6.4□□□□□ -1.39
SYNE1-214ENST00000454018 CRISP2P16562 243 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 ZNF138P52744 262 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 COL7A1Q02388 2944 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 ERCC8Q13216 396 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 SPINK13Q1W4C9 94 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 DEFB135Q30KP9 77 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 Q8TAT8 98 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 TM2D3Q9BRN9 247 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 NDFIP1Q9BT67 221 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 XCL2Q9UBD3 114 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 DKK2Q9UBU2 259 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 VAX2Q9UIW0 290 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 TP53TG1Q9Y2A0 90 aa6.4□□□□□ -1.39
SYNE1-214ENST00000454018 STAB2Q8WWQ8 2551 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 A0A0A0MQY5 61 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 TRAV8-1A0A0A6YYK1 113 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 A4D1N5 150 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 NHLRC4P0CG21 123 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-214ENST00000454018 CT45A10P0DMU9 189 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 AKR1C3P42330 323 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 UBE2G1P62253 170 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 FLI1Q01543 452 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-214ENST00000454018 C11orf52Q96A22 123 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 FMC1Q96HJ9 113 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 FAM19A4Q96LR4 140 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 IGF2BP2-AS1Q96M15 143 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 RCHY1Q96PM5 261 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 C20orf144Q9BQM9 153 aa6.39□□□□□ -1.39
SYNE1-214ENST00000454018 SCO2A0A1W2PP80 73 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 RBFOX3A6NFN3 312 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 KLLNB2CW77 178 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 NDUFS6O75380 124 aaKnown RBP6.38□□□□□ -1.39
SYNE1-214ENST00000454018 IGLV2-11P01706 119 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 S100A9P06702 114 aaKnown RBP6.38□□□□□ -1.39
SYNE1-214ENST00000454018 FXYD7P58549 80 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 IFITM2Q01629 132 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 ZNF506Q5JVG8 444 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 Q86TA4 180 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 TMEM256Q8N2U0 113 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 CSNK1G2-AS1Q8NCQ2 148 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 PCNPQ8WW12 178 aaKnown RBP6.38□□□□□ -1.39
SYNE1-214ENST00000454018 RNF183Q96D59 192 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 FAM210AQ96ND0 272 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 ASCL2Q99929 193 aa6.38□□□□□ -1.39
SYNE1-214ENST00000454018 TRBV6-1A0A0K0K1D8 114 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 TMEM250H0YL14 139 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 CRXO43186 299 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-214ENST00000454018 GPX1P07203 203 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 TMEM183BQ1AE95 376 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 CLLU1Q5K131 121 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 SAPCD1Q5SSQ6 148 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 GFI1BQ5VTD9 330 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 ZFAND2AQ8N6M9 145 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 PSG8Q9UQ74 426 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 GOLT1BQ9Y3E0 138 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 KLF12Q9Y4X4 402 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 TGP01266 2768 aa6.37□□□□□ -1.39
SYNE1-214ENST00000454018 TRAV12-2A0A075B6T6 113 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 KRTAP23-1A1A580 65 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 C7orf71A4D174 169 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 ZNF705AQ6ZN79 300 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-214ENST00000454018 PRNTQ86SH4 94 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 SYT8Q8NBV8 401 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 SGK494Q96LW2 274 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 RARRES2Q99969 163 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 OVOL2Q9BRP0 275 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 NIPSNAP3BQ9BS92 247 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 TMEM208Q9BTX3 173 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 EIF5A2Q9GZV4 153 aaKnown RBP6.36□□□□□ -1.39
SYNE1-214ENST00000454018 RETNQ9HD89 108 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 TREM1Q9NP99 234 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 ZFP30Q9Y2G7 519 aa6.36□□□□□ -1.39
SYNE1-214ENST00000454018 LTAP01374 205 aa6.35□□□□□ -1.39
SYNE1-214ENST00000454018 NPSP0C0P6 89 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms