RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TMEM189A5PLL7 270 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 PHGR1C9JFL3 82 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 TSTD3H0UI37 97 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 UQCRQO14949 82 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 IGF2P01344 180 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 HBDP02042 147 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 RPS3P23396 243 aaKnown RBP eCLIP0.4□□□□□ -2.35
USP40-209ENST00000452724 GTF2A1P52655 376 aaPredicted RBP0.4□□□□□ -2.35
USP40-209ENST00000452724 CAV3P56539 151 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 SNRPD3P62318 126 aaKnown RBP0.4□□□□□ -2.35
USP40-209ENST00000452724 OR51A4Q8NGJ6 313 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 HSPB11Q9Y547 144 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 MUC4Q99102 2169 aa0.4□□□□□ -2.35
USP40-209ENST00000452724 TCOF1Q13428 1488 aaKnown RBP0.4□□□□□ -2.35
USP40-209ENST00000452724 USP24Q9UPU5 2620 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 PHRF1Q9P1Y6 1649 aaKnown RBP0.39□□□□□ -2.35
USP40-209ENST00000452724 SIP14410 1827 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 LOC107984156A0A0G2JMH3 177 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 NUPR2A6NF83 97 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 NBEAP1P0C6P0 100 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 ZNF137PP52743 207 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 B2MP61769 119 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 RHOHQ15669 191 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 ARL17AQ8IVW1 177 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 SMIM7Q9BQ49 75 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 MRPL36Q9P0J6 103 aaKnown RBP0.39□□□□□ -2.35
USP40-209ENST00000452724 GINS2Q9Y248 185 aa0.39□□□□□ -2.35
USP40-209ENST00000452724 DSPPQ9NZW4 1301 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 FAM135BQ49AJ0 1406 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 FGD6Q6ZV73 1430 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 MYLKQ15746 1914 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 MED23Q9ULK4 1368 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 EVI2AP22794 236 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 SPINT3P49223 89 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 SPINK7P58062 85 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 SPINK13Q1W4C9 94 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 CSAG1Q6PB30 78 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 Q86TA4 180 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 OR8J3Q8NGG0 315 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 PLAC8Q9NZF1 115 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 NDUFAF1Q9Y375 327 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 KMT2DO14686 5537 aa0.38□□□□□ -2.35
USP40-209ENST00000452724 CITO14578 2027 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 CHD3Q12873 2000 aaKnown RBP0.37□□□□□ -2.35
USP40-209ENST00000452724 PNMA8CA0A1B0GUJ8 204 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 A0A1B0GX51 115 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 GNG14A0A1W2PPG7 69 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 TMEM30CPA0ZSE6 113 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 HIGD1CA8MV81 97 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 H0YJX3 145 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 EDF1O60869 148 aaKnown RBP0.37□□□□□ -2.35
USP40-209ENST00000452724 PRH1P02810 166 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 CKS2P33552 79 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 IDO2Q6ZQW0 420 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 BRK1Q8WUW1 75 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 DMAC1Q96GE9 116 aa0.37□□□□□ -2.35
USP40-209ENST00000452724 PTPRFP10586 1907 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 MYH2Q9UKX2 1941 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 IGHV1-24A0A0C4DH33 117 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 J3KT08 172 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 M0QZK8 103 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 DPM2O94777 84 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 SLC25A5P05141 298 aaKnown RBP0.36□□□□□ -2.35
USP40-209ENST00000452724 SCTP09683 121 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 PSPHP78330 225 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 QRFPP83859 136 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 GLYATL3Q5SZD4 288 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 C6orf52Q5T4I8 152 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 LYPD5Q6UWN5 251 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 TAC4Q86UU9 113 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 OTOSQ8NHW6 89 aa0.36□□□□□ -2.35
USP40-209ENST00000452724 APCP25054 2843 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 TRAV36DV7A0A075B6V5 113 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 BORCS7-ASMTA0A0B4J1R7 106 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 A0A0G2JMM0 328 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 DEGS1O15121 323 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 TPST1O60507 370 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 HIST1H1BP16401 226 aaKnown RBP0.35□□□□□ -2.35
USP40-209ENST00000452724 OR8I2Q8N0Y5 310 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 OR4S1Q8NGB4 309 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 MAGOHBQ96A72 148 aaKnown RBP0.35□□□□□ -2.35
USP40-209ENST00000452724 LINC00208Q96KT6 92 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 COMMD3Q9UBI1 195 aa0.35□□□□□ -2.35
USP40-209ENST00000452724 METTL1Q9UBP6 276 aaKnown RBP0.35□□□□□ -2.35
USP40-209ENST00000452724 OVOS2A0A0G2JMS6 1433 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 NBDYA0A0U1RRE5 68 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 TCRAP04437 139 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 PAEPP09466 180 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 KDELR1P24390 212 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 DR1Q01658 176 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 FXYD3Q14802 87 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 HSD17B12Q53GQ0 312 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 NUP210LQ5VU65 1888 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 Q5XG85 94 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 TMEM91Q6ZNR0 172 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 C5orf56Q8N8D9 126 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 SMR3AQ99954 134 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 ATG5Q9H1Y0 275 aa0.34□□□□□ -2.36
USP40-209ENST00000452724 N4BP2Q86UW6 1770 aaPredicted RBP0.34□□□□□ -2.36
USP40-209ENST00000452724 NAV3Q8IVL0 2385 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms