RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PET100P0DJ07 73 aa14.35□□□□□ -0.11
SDC1-205ENST00000447124 MED14OSP0DP75 135 aa14.35□□□□□ -0.11
SDC1-205ENST00000447124 UBE2L3P68036 154 aaKnown RBP14.35□□□□□ -0.11
SDC1-205ENST00000447124 A0A096LPF7 62 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 RBAKDNA6NC62 111 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 DIRC3C9JPN6 131 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 CSN1S1P47710 185 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 IBA57Q5T440 356 aaKnown RBP14.34□□□□□ -0.11
SDC1-205ENST00000447124 ZNF575Q86XF7 245 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 KRTAP1-5Q9BYS1 174 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 ALG5Q9Y673 324 aa14.34□□□□□ -0.11
SDC1-205ENST00000447124 ZNF266Q14584 549 aa14.33□□□□□ -0.12
SDC1-205ENST00000447124 MRPL16Q9NX20 251 aaKnown RBP14.33□□□□□ -0.12
SDC1-205ENST00000447124 KHDC3LQ587J8 217 aa14.32□□□□□ -0.12
SDC1-205ENST00000447124 UPK3BQ9BT76 320 aa14.32□□□□□ -0.12
SDC1-205ENST00000447124 BATF3Q9NR55 127 aa14.32□□□□□ -0.12
SDC1-205ENST00000447124 PGPA6NDG6 321 aa14.31□□□□□ -0.12
SDC1-205ENST00000447124 TAS2R45P59539 299 aa14.31□□□□□ -0.12
SDC1-205ENST00000447124 MUC21Q5SSG8 566 aa14.31□□□□□ -0.12
SDC1-205ENST00000447124 MDFICQ9P1T7 246 aa14.31□□□□□ -0.12
SDC1-205ENST00000447124 MRPS16Q9Y3D3 137 aaKnown RBP14.31□□□□□ -0.12
SDC1-205ENST00000447124 IGHV3-53P01767 116 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 RAB2AP61019 212 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 ACOT6Q3I5F7 207 aaPredicted RBP14.3□□□□□ -0.12
SDC1-205ENST00000447124 ST6GAL2Q96JF0 529 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 HYLS1Q96M11 299 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 ARPC5LQ9BPX5 153 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 OTORQ9NRC9 128 aa14.3□□□□□ -0.12
SDC1-205ENST00000447124 HSPG2P98160 4391 aa14.29□□□□□ -0.12
SDC1-205ENST00000447124 Q6AWC8 147 aa14.29□□□□□ -0.12
SDC1-205ENST00000447124 ABCA13Q86UQ4 5058 aa14.29□□□□□ -0.12
SDC1-205ENST00000447124 HMGB3O15347 200 aaKnown RBP14.28□□□□□ -0.12
SDC1-205ENST00000447124 FHL2Q14192 279 aa14.28□□□□□ -0.12
SDC1-205ENST00000447124 Q5BKY6 102 aa14.28□□□□□ -0.12
SDC1-205ENST00000447124 LENEPQ9Y5L5 61 aa14.28□□□□□ -0.12
SDC1-205ENST00000447124 A0A1W2PPV4 95 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 PAX4O43316 350 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 PQLC2Q6ZP29 291 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 OR10G4Q8NGN3 311 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 OR10G9Q8NGN4 311 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 OR10G7Q8NGN6 311 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 TMED6Q8WW62 240 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 TVP23CQ96ET8 276 aa14.27□□□□□ -0.13
SDC1-205ENST00000447124 ZNF415Q09FC8 603 aa14.26□□□□□ -0.13
SDC1-205ENST00000447124 RPH3ALQ9UNE2 315 aa14.26□□□□□ -0.13
SDC1-205ENST00000447124 DNAH5Q8TE73 4624 aa14.26□□□□□ -0.13
SDC1-205ENST00000447124 CRYBA4P53673 196 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 TMEM183BQ1AE95 376 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 GOLT1AQ6ZVE7 132 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 TMEM183AQ8IXX5 376 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 CMTM2Q8TAZ6 248 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 C8orf49Q96NF6 230 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 PRO0255Q9UI72 69 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 HHLA3Q9XRX5 114 aa14.25□□□□□ -0.13
SDC1-205ENST00000447124 TRAV8-1A0A0A6YYK1 113 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 GNRH2O43555 120 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 GNG5P63218 68 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 ARL6IP6Q8N6S5 226 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 HSD17B11Q8NBQ5 300 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 RASL10AQ92737 203 aa14.24□□□□□ -0.13
SDC1-205ENST00000447124 A0A1W2PPQ1 181 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 PTTG1O95997 202 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 SFTA3P0C7M3 94 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 TTC32Q5I0X7 151 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 FAM159AQ6UWV7 190 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 OR2G3Q8NGZ4 309 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 ZNF479Q96JC4 524 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 AQP10Q96PS8 301 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 MED28Q9H204 178 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 ICOSQ9Y6W8 199 aa14.23□□□□□ -0.13
SDC1-205ENST00000447124 APOBP04114 4563 aaKnown RBP14.22□□□□□ -0.13
SDC1-205ENST00000447124 STAG3L2P0CL84 134 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 STAG3L3P0CL85 134 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 ARL14EPLP0DKL9 152 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 ATP6V0CP27449 155 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 TDRG1Q3Y452 100 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 FAM74A1Q5RGS3 127 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 LYPD5Q6UWN5 251 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 SUN5Q8TC36 379 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 SGK494Q96LW2 274 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 SPXQ9BT56 116 aa14.22□□□□□ -0.13
SDC1-205ENST00000447124 C16orf90A8MZG2 172 aa14.21□□□□□ -0.13
SDC1-205ENST00000447124 CDC34P49427 236 aaPredicted RBP14.21□□□□□ -0.13
SDC1-205ENST00000447124 SLAQ13239 276 aa14.21□□□□□ -0.13
SDC1-205ENST00000447124 IQCF2Q8IXL9 164 aa14.21□□□□□ -0.13
SDC1-205ENST00000447124 RAB24Q969Q5 203 aa14.21□□□□□ -0.13
SDC1-205ENST00000447124 NAGKQ9UJ70 344 aa14.21□□□□□ -0.13
SDC1-205ENST00000447124 TRGV11A0A075B6L2 103 aa14.2□□□□□ -0.14
SDC1-205ENST00000447124 IGHV3-16A0A0C4DH30 117 aa14.2□□□□□ -0.14
SDC1-205ENST00000447124 F6UZH7 168 aa14.2□□□□□ -0.14
SDC1-205ENST00000447124 PSMG3Q9BT73 122 aaPredicted RBP14.2□□□□□ -0.14
SDC1-205ENST00000447124 TREM1Q9NP99 234 aa14.2□□□□□ -0.14
SDC1-205ENST00000447124 TRGV4A0A0C4DH28 118 aa14.19□□□□□ -0.14
SDC1-205ENST00000447124 NXPH4O95158 308 aa14.19□□□□□ -0.14
SDC1-205ENST00000447124 GCHFRP30047 84 aa14.19□□□□□ -0.14
SDC1-205ENST00000447124 MRPL23Q16540 153 aaKnown RBP14.19□□□□□ -0.14
SDC1-205ENST00000447124 KRTAP4-5Q9BYR2 181 aa14.19□□□□□ -0.14
SDC1-205ENST00000447124 SH3BGRL3Q9H299 93 aa14.19□□□□□ -0.14
SDC1-205ENST00000447124 TRAV21A0A0B4J279 112 aa14.18□□□□□ -0.14
SDC1-205ENST00000447124 SIVA1O15304 175 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms