RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MSRB1Q9NZV6 116 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 PEF1Q9UBV8 284 aaKnown RBP12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 DOPEY2Q9Y3R5 2298 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 IGHV3-35A0A0C4DH35 117 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 PRAC2D3DTV9 90 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 SMAD7O15105 426 aaKnown RBP12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 BUB3O43684 328 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 COX6B1P14854 86 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 CDKN1BP46527 198 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.65□□□□□ -0.38
CLCNKA-203ENST00000439316 ANKRD17O75179 2603 aaKnown RBP12.65□□□□□ -0.39
CLCNKA-203ENST00000439316 SVEP1Q4LDE5 3571 aa12.64□□□□□ -0.39
CLCNKA-203ENST00000439316 TRAV8-6A0A0B4J262 113 aa12.64□□□□□ -0.39
CLCNKA-203ENST00000439316 C7orf71A4D174 169 aa12.64□□□□□ -0.39
CLCNKA-203ENST00000439316 PRSS57Q6UWY2 283 aa12.64□□□□□ -0.39
CLCNKA-203ENST00000439316 OR9G4Q8NGQ1 327 aa12.64□□□□□ -0.39
CLCNKA-203ENST00000439316 SIVA1O15304 175 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 AJUBAQ96IF1 538 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 SLC50A1Q9BRV3 221 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 CLPSL1A2RUU4 121 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 PCP4P48539 62 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 ECSCRQ19T08 205 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 BPESC1Q9GZL8 116 aa12.63□□□□□ -0.39
CLCNKA-203ENST00000439316 ATP6V0E1O15342 81 aa12.62□□□□□ -0.39
CLCNKA-203ENST00000439316 HSD52Q0P140 79 aa12.62□□□□□ -0.39
CLCNKA-203ENST00000439316 IL17RELQ6ZVW7 336 aa12.62□□□□□ -0.39
CLCNKA-203ENST00000439316 RNF182Q8N6D2 247 aa12.62□□□□□ -0.39
CLCNKA-203ENST00000439316 NRGNQ92686 78 aa12.62□□□□□ -0.39
CLCNKA-203ENST00000439316 GAS8-AS1O95177 125 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 CLEC3BP05452 202 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 CCDC140Q96MF4 163 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 NXT2Q9NPJ8 142 aaKnown RBP12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 TNFRSF6BO95407 300 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 FCER1GP30273 86 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 UBE2E1P51965 193 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 PIFOQ8TCI5 191 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 DKK2Q9UBU2 259 aa12.61□□□□□ -0.39
CLCNKA-203ENST00000439316 ADAMTSL5Q6ZMM2 481 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 OR4X2Q8NGF9 303 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 CST9LQ9H4G1 147 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 IGKV3D-20A0A0C4DH25 116 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 A6NDN8 102 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 H3BRM9 83 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 LEPP41159 167 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 C21orf62-AS1Q17RA5 79 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 WFDC3Q8IUB2 231 aa12.6□□□□□ -0.39
CLCNKA-203ENST00000439316 NBPF19A0A087WUL8 3843 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 ABCA2Q9BZC7 2435 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 TRAV8-2A0A0B4J237 113 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 PLA2G2AP14555 144 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 ATP5J2P56134 94 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 MRPL53Q96EL3 112 aaKnown RBP12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 C18orf15Q96N68 181 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 AGPAT4-IT1Q9H0P7 198 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 ZMAT4Q9H898 229 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 C11orf21Q9P2W6 132 aa12.59□□□□□ -0.39
CLCNKA-203ENST00000439316 PPIFP30405 207 aaKnown RBP12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 TCTAP57738 103 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 ODF1Q14990 250 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 PSMG4Q5JS54 123 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 CLEC19AQ6UXS0 136 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 PCP2Q8IVA1 136 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV3-66A0A0C4DH42 116 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 C9orf118A6NHY6 69 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 EVI2AP22794 236 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 SAA4P35542 130 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 NMUP48645 174 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 LMO4P61968 165 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 EEF1AKMT3Q96AZ1 226 aa12.58□□□□□ -0.4
CLCNKA-203ENST00000439316 IGLV2-18A0A075B6J9 118 aa12.57□□□□□ -0.4
CLCNKA-203ENST00000439316 GATA1P15976 413 aaPredicted RBP12.57□□□□□ -0.4
CLCNKA-203ENST00000439316 OCIAD2Q56VL3 154 aa12.57□□□□□ -0.4
CLCNKA-203ENST00000439316 Q8N8P6 123 aa12.57□□□□□ -0.4
CLCNKA-203ENST00000439316 HIF1ANQ9NWT6 349 aa12.57□□□□□ -0.4
CLCNKA-203ENST00000439316 G3V318 75 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 UFSP1Q6NVU6 142 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 JMJD8Q96S16 334 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 METTL26Q96S19 204 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 U3KQE9 123 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 NAV2Q8IVL1 2488 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 APCP25054 2843 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 TRBV7-1A0A0A6YYK4 115 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV7-4-1A0A0J9YVY3 117 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 LINC01548A6NM66 108 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 TRGV3P03979 118 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 KIR3DS1Q14943 382 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 TMEM78Q5T7P6 136 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 C8orf86Q6ZUL3 223 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 PIMREGQ9BSJ6 248 aa12.56□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV3OR16-13A0A075B7E8 117 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 IGHV3-74A0A0B4J1X5 117 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 CENPVL3A0A0U1RRI6 287 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 GAGE12BA1L429 117 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 J3QKU1 62 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 C9orf47Q6ZRZ4 202 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 OR2K2Q8NGT1 345 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 C10orf105Q8TEF2 133 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 HHLA3Q9XRX5 114 aa12.55□□□□□ -0.4
CLCNKA-203ENST00000439316 PRSS47A8MTI9 375 aa12.54□□□□□ -0.4
CLCNKA-203ENST00000439316 RNF151Q2KHN1 245 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms