RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 MRPL35Q9NZE8 188 aaKnown RBP5.91□□□□□ -1.46
CPSF6-202ENST00000435070 ATXN8Q156A1 80 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 C3orf36Q3SXR2 165 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 KLF17Q5JT82 389 aaPredicted RBP5.91□□□□□ -1.46
CPSF6-202ENST00000435070 ATP1A1-AS1Q5TC04 95 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 TPSG1Q9NRR2 321 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 TMEM170BQ5T4T1 132 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 TM2D2Q9BX73 214 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 KLK15Q9H2R5 256 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 SMCPP49901 116 aaPredicted RBP5.91□□□□□ -1.46
CPSF6-202ENST00000435070 PRB3Q04118 309 aaPredicted RBP5.91□□□□□ -1.46
CPSF6-202ENST00000435070 DIAPH2-AS1Q14236 149 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 ITLN2Q8WWU7 325 aaPredicted RBP5.91□□□□□ -1.46
CPSF6-202ENST00000435070 NDUFA4L2Q9NRX3 87 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 IGHV1-2P23083 117 aa5.91□□□□□ -1.46
CPSF6-202ENST00000435070 LINC01549A6NIU2 74 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 GP9P14770 177 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 TMEM158Q8WZ71 300 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 PHLDA3Q9Y5J5 127 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 GAGE7O76087 117 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 IGLV2-11P01706 119 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 GAGE12FP0CL80 117 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 GAGE12GP0CL81 117 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 GAGE12IP0CL82 117 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 KLRD1Q13241 179 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 NSUN5P1Q3KNT7 163 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 FAM216BQ8N7L0 139 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 TMEM75Q8N9X5 138 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 S4R3C0 116 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 OVOL3O00110 214 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 DPM2O94777 84 aa5.9□□□□□ -1.46
CPSF6-202ENST00000435070 BRK1Q8WUW1 75 aa5.9□□□□□ -1.47
CPSF6-202ENST00000435070 HIGD1BQ9P298 99 aa5.9□□□□□ -1.47
CPSF6-202ENST00000435070 GLRXP35754 106 aa5.9□□□□□ -1.47
CPSF6-202ENST00000435070 UBE2DNLQ8IWF7 75 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 TNRC6BQ9UPQ9 1833 aaKnown RBP5.89□□□□□ -1.47
CPSF6-202ENST00000435070 TRAV2A0A0B4J234 112 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 CNTFRP26992 372 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 SPTSSBQ8NFR3 76 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 RETNQ9HD89 108 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 KALRNO60229 2985 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 RBMY1FQ15415 496 aaKnown RBP5.89□□□□□ -1.47
CPSF6-202ENST00000435070 LY6G6EA0A0G2JKS1 128 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 A0A1W2PPI3 338 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 TMEM133Q9H2Q1 129 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 OTORQ9NRC9 128 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 U3KQA8 63 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 SRRM5B3KS81 715 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 CCL3L1P16619 93 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 Q6AWC8 147 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 SMRP1Q8NCR6 262 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 Q8TAT8 98 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 TMEM126AQ9H061 195 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 CCDC179H3BU77 68 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 CECR9P0C854 216 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 HLA-DRB4P13762 266 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 PAPPA-AS1Q5QFB9 102 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 ZCCHC24Q8N2G6 241 aaKnown RBP5.89□□□□□ -1.47
CPSF6-202ENST00000435070 HLA-DRB4X5D2U9 266 aa5.89□□□□□ -1.47
CPSF6-202ENST00000435070 RPL27AP46776 148 aaKnown RBP5.88□□□□□ -1.47
CPSF6-202ENST00000435070 EFNA4P52798 201 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 IGFL4Q6B9Z1 124 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 DLX4Q92988 240 aaPredicted RBP5.88□□□□□ -1.47
CPSF6-202ENST00000435070 CARD19Q96LW7 228 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 SNRPD3P62318 126 aaKnown RBP5.88□□□□□ -1.47
CPSF6-202ENST00000435070 WFDC11Q8NEX6 87 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 LTBRP36941 435 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 RITA1Q96K30 269 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 DUX3Q96PT4 197 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 LOC400499M0QZD8 3231 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 MORN3Q6PF18 240 aaPredicted RBP5.88□□□□□ -1.47
CPSF6-202ENST00000435070 SLC25A39Q9BZJ4 359 aaPredicted RBP5.88□□□□□ -1.47
CPSF6-202ENST00000435070 LAMTOR3Q9UHA4 124 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 CFAP126Q5VTH2 177 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 DEFB104AQ8WTQ1 72 aa5.88□□□□□ -1.47
CPSF6-202ENST00000435070 AKAP6Q13023 2319 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 SH2D1AO60880 128 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 C8orf46Q8TAG6 207 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 IGKV2-40A0A087WW87 121 aaPredicted RBP5.87□□□□□ -1.47
CPSF6-202ENST00000435070 IGKV2D-40P01614 121 aaPredicted RBP5.87□□□□□ -1.47
CPSF6-202ENST00000435070 MSMPQ1L6U9 139 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 TOMM7Q9P0U1 55 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 PCSK5Q92824 1860 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 DMDP11532 3685 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 VPREB1P12018 145 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 THAP8Q8NA92 274 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 VKORC1Q9BQB6 163 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 SPANXCQ9NY87 97 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 SPTBN1Q01082 2364 aaKnown RBP5.87□□□□□ -1.47
CPSF6-202ENST00000435070 CGB3P0DN86 165 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 CGB7P0DN87 165 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 MALP21145 153 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.87□□□□□ -1.47
CPSF6-202ENST00000435070 CTSZQ9UBR2 303 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 TACC2O95359 2948 aa5.87□□□□□ -1.47
CPSF6-202ENST00000435070 H3BMM0 161 aa5.86□□□□□ -1.47
CPSF6-202ENST00000435070 TRGV3P03979 118 aa5.86□□□□□ -1.47
CPSF6-202ENST00000435070 PPDPFLQ8WWR9 84 aa5.86□□□□□ -1.47
CPSF6-202ENST00000435070 UBE2WQ96B02 151 aa5.86□□□□□ -1.47
CPSF6-202ENST00000435070 CRPP02741 224 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms