RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 SPRR3Q9UBC9 169 aa12.46□□□□□ -0.41
C9orf3-206ENST00000428313 IGKV2-40A0A087WW87 121 aaPredicted RBP12.46□□□□□ -0.42
C9orf3-206ENST00000428313 IGKV2D-40P01614 121 aaPredicted RBP12.46□□□□□ -0.42
C9orf3-206ENST00000428313 ORM1P02763 201 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 MSMPQ1L6U9 139 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 C5orf47Q569G3 176 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 ZNF491Q8N8L2 437 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 TOMM6Q96B49 74 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 RNF125Q96EQ8 232 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 LINC01587Q99440 93 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 VKORC1Q9BQB6 163 aa12.46□□□□□ -0.42
C9orf3-206ENST00000428313 ARFGEF3Q5TH69 2177 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 A0A0J9YY99 117 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 SCGB2A1O75556 95 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 P0DMU3 169 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 FAM231AP0DMU4 169 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 FAM231CP0DMU5 169 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 ORMDL2Q53FV1 153 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 SPXQ9BT56 116 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 SDK1Q7Z5N4 2213 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 IGHV3-30P01768 117 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 CRYGBP07316 175 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 IGHV3-30-5P0DP03 117 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 NTN5Q8WTR8 489 aaPredicted RBP12.45□□□□□ -0.42
C9orf3-206ENST00000428313 DNAJC30Q96LL9 226 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 SCGB3A1Q96QR1 104 aa12.45□□□□□ -0.42
C9orf3-206ENST00000428313 WDR87Q6ZQQ6 2873 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 TRGV5A0A0B4J1U4 118 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 TEX22C9J3V5 150 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 FAM57AQ8TBR7 257 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 CSDC2Q9Y534 153 aaKnown RBP12.44□□□□□ -0.42
C9orf3-206ENST00000428313 WDFY3Q8IZQ1 3526 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 TGFAP01135 160 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 DEFB127Q9H1M4 99 aa12.44□□□□□ -0.42
C9orf3-206ENST00000428313 INTS1Q8N201 2190 aaKnown RBP12.44□□□□□ -0.42
C9orf3-206ENST00000428313 PLXNB1O43157 2135 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 TRAV2A0A0B4J234 112 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 SPRY3O43610 288 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 ERCC8Q13216 396 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 DEFB108BQ8NET1 73 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 SMIM2Q9BVW6 85 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 CTSZQ9UBR2 303 aa12.43□□□□□ -0.42
C9orf3-206ENST00000428313 DUSP14O95147 198 aaKnown RBP12.42□□□□□ -0.42
C9orf3-206ENST00000428313 APELAP0DMC3 54 aa12.42□□□□□ -0.42
C9orf3-206ENST00000428313 TEX36Q5VZQ5 186 aa12.42□□□□□ -0.42
C9orf3-206ENST00000428313 Q8TAT8 98 aa12.42□□□□□ -0.42
C9orf3-206ENST00000428313 CFAP54Q96N23 3096 aa12.42□□□□□ -0.42
C9orf3-206ENST00000428313 CRIP2P52943 208 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-206ENST00000428313 BAALCQ8WXS3 180 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 LGALS9O00182 355 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 TRGV3P03979 118 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 HERVK_113P61574 105 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 ATXN8Q156A1 80 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 SLC25A29Q8N8R3 303 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 TIMD4Q96H15 378 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 SIGLEC9Q9Y336 463 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 CEP290O15078 2479 aa12.41□□□□□ -0.42
C9orf3-206ENST00000428313 TRBV7-7A0A0K0K1E9 115 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 TIMM23O14925 209 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 CCL3L1P16619 93 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 TRPT1Q86TN4 253 aaKnown RBP12.4□□□□□ -0.42
C9orf3-206ENST00000428313 MDS2Q8NDY4 140 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 FAM240AA0A1B0GVK7 77 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 ENSAO43768 121 aaKnown RBP12.4□□□□□ -0.42
C9orf3-206ENST00000428313 FOXC1Q12948 553 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 LINC01620Q4KN68 170 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 SPANXDQ9BXN6 97 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 SIT1Q9Y3P8 196 aa12.4□□□□□ -0.42
C9orf3-206ENST00000428313 EYSQ5T1H1 3165 aa12.4□□□□□ -0.43
C9orf3-206ENST00000428313 H3BMM0 161 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 K7EIM0 57 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 ATP5J2P56134 94 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 PAPPA-AS1Q5QFB9 102 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 UBE2WQ96B02 151 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 C21orf62Q9NYP8 219 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 IGHV4-4A0A075B6R2 117 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 TRBV10-2A0A0K0K1G8 114 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 IGHV3-33P01772 117 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 CFIP05156 583 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 TMEM155Q4W5P6 130 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 C1orf210Q8IVY1 113 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 COL27A1Q8IZC6 1860 aaPredicted RBP12.39□□□□□ -0.43
C9orf3-206ENST00000428313 CNEP1R1Q8N9A8 125 aa12.39□□□□□ -0.43
C9orf3-206ENST00000428313 IGLV3-9A0A075B6K5 115 aa12.38□□□□□ -0.43
C9orf3-206ENST00000428313 TRAV26-2A0A0B4J265 109 aa12.38□□□□□ -0.43
C9orf3-206ENST00000428313 RPL7P18124 248 aaKnown RBP12.38□□□□□ -0.43
C9orf3-206ENST00000428313 KLHL30-AS1Q8NEE0 82 aa12.38□□□□□ -0.43
C9orf3-206ENST00000428313 A0A0B4J2C4 111 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 M0R2P5 195 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 CD59P13987 128 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 TNFAIP6P98066 277 aaPredicted RBP12.37□□□□□ -0.43
C9orf3-206ENST00000428313 TMEM200BQ69YZ2 307 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 SLC50A1Q9BRV3 221 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 TEX49A0A1B0GTD5 131 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 GLRXP35754 106 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 HES1Q14469 280 aa12.37□□□□□ -0.43
C9orf3-206ENST00000428313 TMEM263Q8WUH6 116 aaKnown RBP12.36□□□□□ -0.43
C9orf3-206ENST00000428313 CHCHD5Q9BSY4 110 aa12.36□□□□□ -0.43
C9orf3-206ENST00000428313 FRYQ5TBA9 3013 aa12.36□□□□□ -0.43
C9orf3-206ENST00000428313 WIPF1O43516 503 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms