RNA–Protein interactions for RNA: ENST00000428064.5

LIMS1-208, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 2

Gene LIMS1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-208ENST00000428064 ICOSQ9Y6W8 199 aa14.43□□□□□ -0.1
LIMS1-208ENST00000428064 OR7C2O60412 319 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 CSN1S1P47710 185 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 H2BFSP57053 126 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 IFITM3Q01628 133 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 ZNF415Q09FC8 603 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 ZNF266Q14584 549 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 PPP1R1CQ8WVI7 109 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 PRO0255Q9UI72 69 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 LENEPQ9Y5L5 61 aa14.42□□□□□ -0.1
LIMS1-208ENST00000428064 INMT-MINDY4F8WBC2 141 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 PAX4O43316 350 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 PET100P0DJ07 73 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 Q6ZQT7 251 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 Q8TAT8 98 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 MARVELD1Q9BSK0 173 aa14.41□□□□□ -0.1
LIMS1-208ENST00000428064 SIVA1O15304 175 aa14.4□□□□□ -0.1
LIMS1-208ENST00000428064 KHDC3LQ587J8 217 aa14.4□□□□□ -0.1
LIMS1-208ENST00000428064 MRPL16Q9NX20 251 aaKnown RBP14.4□□□□□ -0.1
LIMS1-208ENST00000428064 HSPB11Q9Y547 144 aa14.4□□□□□ -0.1
LIMS1-208ENST00000428064 CRYBA4P53673 196 aa14.39□□□□□ -0.11
LIMS1-208ENST00000428064 LINC00315P59091 139 aa14.39□□□□□ -0.11
LIMS1-208ENST00000428064 RANP62826 216 aaKnown RBP14.39□□□□□ -0.11
LIMS1-208ENST00000428064 UBE2L3P68036 154 aaKnown RBP14.39□□□□□ -0.11
LIMS1-208ENST00000428064 Q6AWC8 147 aa14.39□□□□□ -0.11
LIMS1-208ENST00000428064 Q6ZRN7 208 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-208ENST00000428064 TMED6Q8WW62 240 aa14.39□□□□□ -0.11
LIMS1-208ENST00000428064 MPC2O95563 127 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 TAS2R45P59539 299 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 FHL2Q14192 279 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 FFAR4Q5NUL3 377 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 MAPKAPK5-AS1Q8N8E1 139 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 HHLA3Q9XRX5 114 aa14.38□□□□□ -0.11
LIMS1-208ENST00000428064 DIRC3C9JPN6 131 aa14.37□□□□□ -0.11
LIMS1-208ENST00000428064 IQCF2Q8IXL9 164 aa14.37□□□□□ -0.11
LIMS1-208ENST00000428064 NXPH4O95158 308 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 IFNA5P01569 189 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 IGHV3-53P01767 116 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 DEFA1P59665 94 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 DEFA3P59666 94 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 KRTAP10-2P60368 255 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 MRPL23Q16540 153 aaKnown RBP14.36□□□□□ -0.11
LIMS1-208ENST00000428064 ARL6IP6Q8N6S5 226 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 RASL10AQ92737 203 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 SPXQ9BT56 116 aa14.36□□□□□ -0.11
LIMS1-208ENST00000428064 TDRG1Q3Y452 100 aa14.35□□□□□ -0.11
LIMS1-208ENST00000428064 OR10G4Q8NGN3 311 aa14.35□□□□□ -0.11
LIMS1-208ENST00000428064 SCGB1C1Q8TD33 95 aa14.35□□□□□ -0.11
LIMS1-208ENST00000428064 TRGV11A0A075B6L2 103 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 RPL12P30050 165 aaKnown RBP14.34□□□□□ -0.11
LIMS1-208ENST00000428064 MUC21Q5SSG8 566 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 LYPD5Q6UWN5 251 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 NEGR1Q7Z3B1 354 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 Q8N1X5 172 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 C8orf49Q96NF6 230 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 OTORQ9NRC9 128 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 MDFICQ9P1T7 246 aa14.34□□□□□ -0.11
LIMS1-208ENST00000428064 K7EP13 123 aa14.33□□□□□ -0.12
LIMS1-208ENST00000428064 SSNA1O43805 119 aa14.33□□□□□ -0.12
LIMS1-208ENST00000428064 FAM159AQ6UWV7 190 aa14.33□□□□□ -0.12
LIMS1-208ENST00000428064 TRGV4A0A0C4DH28 118 aa14.32□□□□□ -0.12
LIMS1-208ENST00000428064 FAM74A1Q5RGS3 127 aa14.32□□□□□ -0.12
LIMS1-208ENST00000428064 PQLC2Q6ZP29 291 aa14.32□□□□□ -0.12
LIMS1-208ENST00000428064 K7EQD1 137 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 ORM1P02763 201 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 TMEM183BQ1AE95 376 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 NFE4Q86UQ8 179 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 TMEM183AQ8IXX5 376 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 CMTM2Q8TAZ6 248 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 ZNF479Q96JC4 524 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 SMIM3Q9BZL3 60 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 MBD2Q9UBB5 411 aa14.31□□□□□ -0.12
LIMS1-208ENST00000428064 SRIP30626 198 aa14.3□□□□□ -0.12
LIMS1-208ENST00000428064 ACOT6Q3I5F7 207 aaPredicted RBP14.3□□□□□ -0.12
LIMS1-208ENST00000428064 HYLS1Q96M11 299 aa14.3□□□□□ -0.12
LIMS1-208ENST00000428064 BATF3Q9NR55 127 aa14.3□□□□□ -0.12
LIMS1-208ENST00000428064 TRAV9-2A0A087WT02 112 aa14.29□□□□□ -0.12
LIMS1-208ENST00000428064 TRAV4A0A0B4J268 109 aa14.29□□□□□ -0.12
LIMS1-208ENST00000428064 PGPA6NDG6 321 aa14.29□□□□□ -0.12
LIMS1-208ENST00000428064 SFTA3P0C7M3 94 aa14.29□□□□□ -0.12
LIMS1-208ENST00000428064 PCNPQ8WW12 178 aaKnown RBP14.29□□□□□ -0.12
LIMS1-208ENST00000428064 PGPEP1Q9NXJ5 209 aa14.29□□□□□ -0.12
LIMS1-208ENST00000428064 A0A1W2PPV4 95 aa14.28□□□□□ -0.12
LIMS1-208ENST00000428064 ERVFC1-1P60608 527 aa14.28□□□□□ -0.12
LIMS1-208ENST00000428064 CDPF1Q6NVV7 123 aa14.28□□□□□ -0.12
LIMS1-208ENST00000428064 WFDC1Q9HC57 220 aa14.28□□□□□ -0.12
LIMS1-208ENST00000428064 LY96Q9Y6Y9 160 aa14.28□□□□□ -0.12
LIMS1-208ENST00000428064 TRAV21A0A0B4J279 112 aa14.27□□□□□ -0.13
LIMS1-208ENST00000428064 C9JCJ5 164 aa14.27□□□□□ -0.13
LIMS1-208ENST00000428064 EREGO14944 169 aa14.27□□□□□ -0.13
LIMS1-208ENST00000428064 TXNDC17Q9BRA2 123 aa14.27□□□□□ -0.13
LIMS1-208ENST00000428064 IGHV3-16A0A0C4DH30 117 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 M0R2P5 195 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 GYPEP15421 78 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 GOLT1AQ6ZVE7 132 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 SCRT2Q9NQ03 307 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 NAGKQ9UJ70 344 aa14.26□□□□□ -0.13
LIMS1-208ENST00000428064 SERTM2A0A1B0GWG4 89 aa14.25□□□□□ -0.13
LIMS1-208ENST00000428064 EIF3GO75821 320 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIMS1-208ENST00000428064 DNAH10OSP0CZ25 163 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms