RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TMSB15BA0A087X1C1 80 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 TRDV1A0A1B0GX56 115 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 C3orf84H3BNL1 204 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 GABARAPH6UMI1 98 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 KPNA4O00629 521 aaPredicted RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 DEGS1O15121 323 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 LYZL6O75951 148 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 CST7O76096 145 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 NAPSAO96009 420 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 FABP2P12104 132 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 RNASE4P34096 147 aaKnown RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 POLR2HP52434 150 aaKnown RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 FXYD2P54710 66 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 ARPP19P56211 112 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 MYL5Q02045 173 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 SLC38A11Q08AI6 406 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 OR8B8Q15620 311 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 CCDC153Q494R4 210 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 C1orf140Q5VVS0 124 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 EIF5AL1Q6IS14 154 aaKnown RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 LINC00471Q8N535 108 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 Q8NDZ9 215 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 SLC30A7Q8NEW0 376 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 OR2T10Q8NGZ9 312 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 CARD19Q96LW7 228 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 SLC25A21Q9BQT8 299 aaPredicted RBP1.81□□□□□ -2.12
USP40-204ENST00000427947 POPDC3Q9HBV1 291 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 MED31Q9Y3C7 131 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 CPDO75976 1380 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 ANKARQ7Z5J8 1434 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 ATP7BP35670 1465 aa1.81□□□□□ -2.12
USP40-204ENST00000427947 TRPM1Q7Z4N2 1603 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 NRAPQ86VF7 1730 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 ECM29Q5VYK3 1845 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 TRAV3A0A0B4J244 114 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 MEIS3P1A6NDR6 274 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 J3QRE1 110 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 K7ERJ3 54 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 PLXNB1O43157 2135 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 PGLYRP1O75594 196 aaPredicted RBP1.8□□□□□ -2.12
USP40-204ENST00000427947 PMP2P02689 132 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 SHBGP04278 402 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 METTL15P1P0C7V9 234 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 RPS3P23396 243 aaKnown RBP eCLIP1.8□□□□□ -2.12
USP40-204ENST00000427947 CMPK1P30085 196 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 GTF2A1P52655 376 aaPredicted RBP1.8□□□□□ -2.12
USP40-204ENST00000427947 CKS1BP61024 79 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 DYNLT1P63172 113 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 PLCXD2Q0VAA5 305 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 BRMS1LQ5PSV4 323 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 C22orf39Q6P5X5 142 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 OR4D11Q8NGI4 311 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 OR4K15Q8NH41 348 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 TEX37Q96LM6 180 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 C20orf166-AS1Q96NR2 134 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 OTORQ9NRC9 128 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 NAT8BQ9UHF3 227 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 CCL26Q9Y258 94 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 KIF24Q5T7B8 1368 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 PHRF1Q9P1Y6 1649 aaKnown RBP1.8□□□□□ -2.12
USP40-204ENST00000427947 SRRM2Q9UQ35 2752 aaKnown RBP1.8□□□□□ -2.12
USP40-204ENST00000427947 KIF1AQ12756 1690 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 PLCH1Q4KWH8 1693 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 ALS2Q96Q42 1657 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 DNAH1Q9P2D7 4330 aa1.8□□□□□ -2.12
USP40-204ENST00000427947 DOCK6Q96HP0 2047 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 MUC21A0A0G2JKD1 596 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 MUC21A0A140T8X8 626 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 C7orf71A4D174 169 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 H7BYZ3 331 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 SDCBPO00560 298 aaPredicted RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 TIMM17BO60830 172 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 GADD45GO95257 159 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 MGST1P10620 155 aaKnown RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 FKBP2P26885 142 aaKnown RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 SDC2P34741 201 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 NDUFA6P56556 154 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 EIF3IQ13347 325 aaKnown RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 ZNF791Q3KP31 576 aaPredicted RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 CCDC58Q4VC31 144 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 C4orf22Q6V702 233 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 PRR15Q8IV56 129 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 TMEM229BQ8NBD8 167 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 OR8B3Q8NGG8 313 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 PSORS1C2Q9UIG4 136 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 JPT1Q9UK76 154 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 RNF11Q9Y3C5 154 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 BCL9O00512 1426 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 PPIP5K1Q6PFW1 1433 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 PKD1L3Q7Z443 1732 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 PEAK1Q9H792 1746 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 NWD2Q9ULI1 1742 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 CRYBG1Q9Y4K1 1723 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 COL14A1Q05707 1796 aaKnown RBP1.79□□□□□ -2.12
USP40-204ENST00000427947 AHCTF1Q8WYP5 2266 aa1.79□□□□□ -2.12
USP40-204ENST00000427947 MYH3P11055 1940 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 ZNF106Q9H2Y7 1883 aaKnown RBP1.78□□□□□ -2.12
USP40-204ENST00000427947 KNDC1Q76NI1 1749 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 LMO7Q8WWI1 1683 aa1.78□□□□□ -2.12
USP40-204ENST00000427947 OVOS2A0A0G2JMS6 1433 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms