RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 BAALCQ8WXS3 180 aa7.75□□□□□ -1.17
USP54-205ENST00000424265 CARD19Q96LW7 228 aa7.75□□□□□ -1.17
USP54-205ENST00000424265 SLC25A39Q9BZJ4 359 aaPredicted RBP7.75□□□□□ -1.17
USP54-205ENST00000424265 BUB1B-PAK6H3BSN5 160 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 ATP5G1P05496 136 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 FGF23Q9GZV9 251 aaPredicted RBP7.74□□□□□ -1.17
USP54-205ENST00000424265 JPT2Q9H910 190 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 KLK5Q9Y337 293 aaPredicted RBP7.74□□□□□ -1.17
USP54-205ENST00000424265 COL27A1Q8IZC6 1860 aaPredicted RBP7.74□□□□□ -1.17
USP54-205ENST00000424265 Q96MF0 132 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 TRAV40A0A0B4J280 105 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 C8orf88P0DMB2 117 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 TTTY13Q9BZ97 58 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 PCNX1Q96RV3 2341 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 NDUFA3O95167 84 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 TMEM258P61165 79 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 FHL3Q13643 280 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 ASPHD1Q5U4P2 390 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 C2orf82Q6UX34 121 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 MOB4Q9Y3A3 225 aa7.74□□□□□ -1.17
USP54-205ENST00000424265 IGHV3-72A0A0B4J1Y9 119 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 A0A0U1RQV1 116 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 UPK2O00526 184 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 C11orf71Q6IPW1 123 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 TREML4Q6UXN2 200 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 GOLT1AQ6ZVE7 132 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 ORMDL3Q8N138 153 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 PAXXQ9BUH6 204 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 PRSS22Q9GZN4 317 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 SIRPDQ9H106 197 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 C19orf84I3L1E1 186 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 PGPA6NDG6 321 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 NDUFS7O75251 213 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 LEPP41159 167 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 LINC00526Q96FQ7 95 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 ANKHD1Q8IWZ3 2542 aaKnown RBP7.73□□□□□ -1.17
USP54-205ENST00000424265 TRGV11A0A075B6L2 103 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 IGHV1-3A0A0C4DH29 117 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 A0A1W2PRX2 142 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 RNF223E7ERA6 249 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 C15orf65H3BRN8 121 aa7.73□□□□□ -1.17
USP54-205ENST00000424265 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.72□□□□□ -1.17
USP54-205ENST00000424265 COX6CP09669 75 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 ZNRF2Q8NHG8 242 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 URB1-AS1Q96HZ7 61 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 C20orf173Q96LM9 149 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 IGHV1-69DA0A0B4J2H0 117 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 LY6HO94772 140 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 IGHV1-69P01742 117 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 C17orf58Q2M2W7 97 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 TFF1P04155 84 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 ECSCRQ19T08 205 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 TMEM170BQ5T4T1 132 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 PHLDA1Q8WV24 401 aaPredicted RBP7.72□□□□□ -1.17
USP54-205ENST00000424265 SPTBN1Q01082 2364 aaKnown RBP7.72□□□□□ -1.17
USP54-205ENST00000424265 C15orf61A6NNL5 157 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 TIMM23O14925 209 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 MSMPQ1L6U9 139 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 CR1LQ2VPA4 569 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 BRK1Q8WUW1 75 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 FREM1Q5H8C1 2179 aa7.72□□□□□ -1.17
USP54-205ENST00000424265 NCOA6Q14686 2063 aaPredicted RBP7.71□□□□□ -1.17
USP54-205ENST00000424265 TCL1BO95988 128 aa7.71□□□□□ -1.17
USP54-205ENST00000424265 LOXL1Q08397 574 aaPredicted RBP7.71□□□□□ -1.17
USP54-205ENST00000424265 ZNF833PQ6ZTB9 187 aa7.71□□□□□ -1.17
USP54-205ENST00000424265 ZNF295-AS1Q8N0V1 137 aa7.71□□□□□ -1.17
USP54-205ENST00000424265 ARHGAP21Q5T5U3 1957 aa7.71□□□□□ -1.17
USP54-205ENST00000424265 NCKAP5O14513 1909 aa7.71□□□□□ -1.17
USP54-205ENST00000424265 LINC01559Q495D7 138 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 SRSF12Q8WXF0 261 aaKnown RBP7.71□□□□□ -1.18
USP54-205ENST00000424265 ZNF493Q6ZR52 646 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 TMEM167AQ8TBQ9 72 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 GFRA4Q9GZZ7 299 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 Q8N1Y9 231 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 RTTNQ86VV8 2226 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 PCSK5Q92824 1860 aa7.71□□□□□ -1.18
USP54-205ENST00000424265 ZNF815PA8K554 130 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 D6R8Y8 96 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 M0R2P5 195 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 ATOX1O00244 68 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 SAA1P0DJI8 122 aaPredicted RBP7.7□□□□□ -1.18
USP54-205ENST00000424265 IGFBPL1Q8WX77 278 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 TMEM158Q8WZ71 300 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 FOXA2Q9Y261 457 aaPredicted RBP7.7□□□□□ -1.18
USP54-205ENST00000424265 EEF1AKMT3Q96AZ1 226 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 ICE1Q9Y2F5 2266 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 RANBP2P49792 3224 aaKnown RBP7.7□□□□□ -1.18
USP54-205ENST00000424265 CTSZQ9UBR2 303 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 hADV29S1A0JD25 119 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 ZFP2Q6ZN57 461 aa7.7□□□□□ -1.18
USP54-205ENST00000424265 FAM236DA0A1B0GTK5 79 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 H7C1H1 209 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 FAM236CP0DP71 79 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 CNTFRP26992 372 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 PFN2P35080 140 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 IGF2BP2-AS1Q96M15 143 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 CEP295Q9C0D2 2601 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 COX7CP15954 63 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 PRCDQ00LT1 54 aa7.69□□□□□ -1.18
USP54-205ENST00000424265 LY6EQ16553 131 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms