RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ODF3Q96PU9 254 aa12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 FAM110AQ9BQ89 295 aa12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 SCO1O75880 301 aa12.72□□□□□ -0.37
CCDC28B-202ENST00000421922 FAM231DQ6ZW35 169 aa12.72□□□□□ -0.37
CCDC28B-202ENST00000421922 SMCO4Q9NRQ5 59 aa12.72□□□□□ -0.37
CCDC28B-202ENST00000421922 CD7P09564 240 aa12.71□□□□□ -0.37
CCDC28B-202ENST00000421922 S100PP25815 95 aa12.71□□□□□ -0.37
CCDC28B-202ENST00000421922 FABP5P3A8MUU1 101 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 H3BMM0 161 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 SH2D1AO60880 128 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 ZNF124Q15973 351 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 KCNIP4Q6PIL6 250 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 COX8CQ7Z4L0 72 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 NUDT10Q8NFP7 164 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 NUDT11Q96G61 164 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 RPP21Q9H633 154 aaKnown RBP12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 TMEM242Q9NWH2 141 aa12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 ZMAT5Q9UDW3 170 aaKnown RBP12.71□□□□□ -0.38
CCDC28B-202ENST00000421922 NOTCH3Q9UM47 2321 aa12.7□□□□□ -0.38
CCDC28B-202ENST00000421922 CRISP2P16562 243 aa12.7□□□□□ -0.38
CCDC28B-202ENST00000421922 TMEM88Q6PEY1 159 aa12.7□□□□□ -0.38
CCDC28B-202ENST00000421922 AGRNO00468 2067 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 XKRY2A2RUG3 117 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 PFN1P07737 140 aaKnown RBP12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 RNASE4P34096 147 aaKnown RBP12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 CDKN1BP46527 198 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 BTN1A1Q13410 526 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 CBLN2Q8IUK8 224 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 OR2D3Q8NGH3 330 aa12.69□□□□□ -0.38
CCDC28B-202ENST00000421922 VWFP04275 2813 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 TRAV21A0A0B4J279 112 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 C19orf71A6NCJ1 209 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 CXorf65A6NEN9 183 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 ORM1P02763 201 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 NUTF2P61970 127 aaKnown RBP12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 SPINK13Q1W4C9 94 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 ZFAND2AQ8N6M9 145 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 FAM19A4Q96LR4 140 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 V9GYV3 84 aa12.68□□□□□ -0.38
CCDC28B-202ENST00000421922 C7orf71A4D174 169 aa12.67□□□□□ -0.38
CCDC28B-202ENST00000421922 TMEM189A5PLL7 270 aa12.67□□□□□ -0.38
CCDC28B-202ENST00000421922 M0R2Z0 102 aa12.67□□□□□ -0.38
CCDC28B-202ENST00000421922 ZNF80P51504 273 aaPredicted RBP12.67□□□□□ -0.38
CCDC28B-202ENST00000421922 LINC00322Q6ZN03 302 aaPredicted RBP12.67□□□□□ -0.38
CCDC28B-202ENST00000421922 A8MWL6 223 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 AMBPP02760 352 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 CRIP1P50238 77 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 FXYD7P58549 80 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 RPS20P60866 119 aaKnown RBP12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 CT83Q5H943 113 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 PRR9Q5T870 116 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 CLUHP3Q96NS8 147 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 IL36BQ9NZH7 164 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 NAGKQ9UJ70 344 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 URGCP-MRPS24S4R325 110 aa12.66□□□□□ -0.38
CCDC28B-202ENST00000421922 A8MTW9 85 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 KLLNB2CW77 178 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 OXLD1Q5BKU9 147 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 AMTNQ6UX39 209 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 IMMP2LQ96T52 175 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 WFDC10AQ9H1F0 79 aa12.65□□□□□ -0.38
CCDC28B-202ENST00000421922 TMSB15BA0A087X1C1 80 aa12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 RPL19P84098 196 aaKnown RBP12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 Q6AWC8 147 aa12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 TRPT1Q86TN4 253 aaKnown RBP12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 DEFB125Q8N687 156 aa12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 TUBA4BQ9H853 241 aa12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 C19orf73Q9NVV2 129 aa12.64□□□□□ -0.39
CCDC28B-202ENST00000421922 TRAV12-2A0A075B6T6 113 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 TRAV12-3A0A0B4J271 114 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 CA1P00915 261 aaPredicted RBP12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 TCL1AP56279 114 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 GFI1BQ5VTD9 330 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 TSKUQ8WUA8 353 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 BTF3L4Q96K17 158 aa12.63□□□□□ -0.39
CCDC28B-202ENST00000421922 A0A1W2PPQ1 181 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 RBMY1BA6NDE4 496 aaKnown RBP12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 RBMY1EA6NEQ0 496 aaKnown RBP12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 INSP01308 110 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 RBMY1DP0C7P1 496 aaKnown RBP12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 RPL35AP18077 110 aaKnown RBP12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 LINC01559Q495D7 138 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 SRD5A3Q9H8P0 318 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 NAT8BQ9UHF3 227 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 KIR3DS1Q14943 382 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 MORN3Q6PF18 240 aaPredicted RBP12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 FAM159AQ6UWV7 190 aa12.62□□□□□ -0.39
CCDC28B-202ENST00000421922 FAM3BP58499 235 aaPredicted RBP12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 BORCS7Q96B45 105 aa12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 KCNS1Q96KK3 526 aa12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 TPPP3Q9BW30 176 aa12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 C1QTNF4Q9BXJ3 329 aa12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 GFRA4Q9GZZ7 299 aa12.61□□□□□ -0.39
CCDC28B-202ENST00000421922 TRAV9-1A0A075B6T8 112 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 SMIM27A0A1W2PRY6 76 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 FAM231BA6NCW3 169 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 MUC21Q5SSG8 566 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 NEU1Q99519 415 aa12.6□□□□□ -0.39
CCDC28B-202ENST00000421922 TMEM208Q9BTX3 173 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms