RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CTSBP07858 339 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 TRBV10-2A0A0K0K1G8 114 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 MRPS36P82909 103 aaKnown RBP10.41□□□□□ -0.74
COL6A3-206ENST00000409809 ZFP2Q6ZN57 461 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 LCNL1Q6ZST4 164 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 SELENOKQ9Y6D0 94 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 LINC01620Q4KN68 170 aa10.41□□□□□ -0.74
COL6A3-206ENST00000409809 MRPL53Q96EL3 112 aaKnown RBP10.41□□□□□ -0.74
COL6A3-206ENST00000409809 PTPRQQ9UMZ3 2332 aa10.4□□□□□ -0.74
COL6A3-206ENST00000409809 C3orf22Q8N5N4 141 aa10.4□□□□□ -0.74
COL6A3-206ENST00000409809 ZNF71Q9NQZ8 489 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-206ENST00000409809 SIGLEC9Q9Y336 463 aa10.4□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3-23P01764 117 aa10.4□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV1-8P0DP01 117 aa10.4□□□□□ -0.74
COL6A3-206ENST00000409809 A0A1B0GUS0 222 aa10.4□□□□□ -0.75
COL6A3-206ENST00000409809 VWC2Q2TAL6 325 aa10.4□□□□□ -0.75
COL6A3-206ENST00000409809 SPATA12Q7Z6I5 190 aa10.4□□□□□ -0.75
COL6A3-206ENST00000409809 PRR25Q96S07 402 aa10.4□□□□□ -0.75
COL6A3-206ENST00000409809 TRGV1A0A0A0MS02 117 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 SMKR1H3BMG3 65 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 SLC25A29Q8N8R3 303 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 WFDC9Q8NEX5 89 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 ANKHD1Q8IWZ3 2542 aaKnown RBP10.39□□□□□ -0.75
COL6A3-206ENST00000409809 K7EM74 188 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 TMEM256-PLSCR3K7ERE1 68 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 C11orf44Q8N8P7 122 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 NDUFA4L2Q9NRX3 87 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 IGHV1-3A0A0C4DH29 117 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 DEFB124Q8NES8 71 aa10.39□□□□□ -0.75
COL6A3-206ENST00000409809 FAM236DA0A1B0GTK5 79 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 CHKB-CPT1BH3BT56 60 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 ZNF561-AS1K7EIQ3 104 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 FAM236CP0DP71 79 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 LY6EQ16553 131 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 NDUFA7O95182 113 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 CRYGBP07316 175 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 FAM168AQ92567 244 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 C2orf16Q68DN1 1984 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 THAP8Q8NA92 274 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 CYYR1Q96J86 154 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 IGKV1-27A0A075B6S5 117 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 IGKV1-12A0A0C4DH73 117 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 IGKV1D-12P01611 117 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 Q6P435 159 aa10.38□□□□□ -0.75
COL6A3-206ENST00000409809 NDUFB1O75438 58 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 Q6ZS92 163 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 IGHV1-2P23083 117 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 COLCA1Q6ZS62 124 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 LRRC75A-AS1Q8N1F1 130 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 COX6B1P14854 86 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 Q8TAT8 98 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 BDP1A6H8Y1 2624 aa10.37□□□□□ -0.75
COL6A3-206ENST00000409809 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-206ENST00000409809 LINC00473A8K010 186 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 ZFP36L1Q07352 338 aaKnown RBP10.36□□□□□ -0.75
COL6A3-206ENST00000409809 SH2D6Q7Z4S9 175 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 LINC00479Q96M42 142 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 DSCR9P59020 149 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 OPRPNQ99935 248 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-206ENST00000409809 PCNX3Q9H6A9 2034 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 IGLV3-19P01714 112 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 ZNF134P52741 427 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 C3orf36Q3SXR2 165 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 FXYD7P58549 80 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 RMI2Q96E14 147 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 CACNA1AO00555 2505 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 OTOGLQ3ZCN5 2332 aa10.36□□□□□ -0.75
COL6A3-206ENST00000409809 LMO1P25800 156 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 U3KQE9 123 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 C22orf46C9J442 243 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 BUB1B-PAK6H3BSN5 160 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 FDCSPQ8NFU4 85 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 SAP25Q8TEE9 199 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 S4R3C0 116 aa10.35□□□□□ -0.75
COL6A3-206ENST00000409809 TMEM213A2RRL7 107 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 SAP30O75446 220 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 LGALS9O00182 355 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 CELA2AP08217 269 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 FOXL2NBQ6ZUU3 175 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 PRR15LQ9BU68 103 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 H3BRN7 92 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 DKK2Q9UBU2 259 aa10.34□□□□□ -0.75
COL6A3-206ENST00000409809 PCP2Q8IVA1 136 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 PAX9P55771 341 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 FXYD5Q96DB9 178 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 ZNF726P1Q15940 193 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 VMO1Q7Z5L0 202 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 WFDC12Q8WWY7 111 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 ZC2HC1AQ96GY0 325 aa10.33□□□□□ -0.76
COL6A3-206ENST00000409809 LTBP1Q14766 1721 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 PROP1O75360 226 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 SEC61GP60059 68 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 A0A087WWL8 130 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 GATA4P43694 442 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 E9PLD3 99 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 WFDC2Q14508 124 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 STPG1Q5TH74 334 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 C8orf31Q8N9H6 132 aa10.32□□□□□ -0.76
COL6A3-206ENST00000409809 MCRIP2Q9BUT9 160 aaKnown RBP10.32□□□□□ -0.76
COL6A3-206ENST00000409809 TRAV25A0A0B4J276 109 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms