RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 XGP55808 180 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 PPP1CAP62136 330 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 MRPL23Q16540 153 aaKnown RBP4.28□□□□□ -1.72
CLK1-202ENST00000409403 C12orf74Q32Q52 190 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 KLF17Q5JT82 389 aaPredicted RBP4.28□□□□□ -1.72
CLK1-202ENST00000409403 CFAP126Q5VTH2 177 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 ZNF329Q86UD4 541 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 RPS19BP1Q86WX3 136 aaKnown RBP4.28□□□□□ -1.72
CLK1-202ENST00000409403 FADS6Q8N9I5 356 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TMEM178AQ8NBL3 297 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 PTH2Q96A98 100 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 PGLYRP4Q96LB8 373 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 PAXXQ9BUH6 204 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 TCF19Q9Y242 345 aa4.28□□□□□ -1.72
CLK1-202ENST00000409403 POLEQ07864 2286 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 HYDINQ4G0P3 5121 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 C5orf49A4QMS7 147 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 SRRM4A7MD48 611 aaKnown RBP4.27□□□□□ -1.73
CLK1-202ENST00000409403 A8MWV9 139 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 ZNHIT1O43257 154 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 COX7A2P2O60397 106 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 FAM106CPP0CH98 169 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 SONP18583 2426 aaKnown RBP4.27□□□□□ -1.73
CLK1-202ENST00000409403 SPINK9Q5DT21 86 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 GFRALQ6UXV0 394 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 Q6ZR03 302 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 TMEM219Q86XT9 240 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 PDPNQ86YL7 162 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 NFAM1Q8NET5 270 aaPredicted RBP4.27□□□□□ -1.73
CLK1-202ENST00000409403 OR10J6PQ8NGY7 276 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 RPEQ96AT9 228 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 FOXC2Q99958 501 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 CITED1Q99966 193 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 RTL8AQ9BWD3 113 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 RAB9BQ9NP90 201 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 VPREB3Q9UKI3 123 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 FOXA2Q9Y261 457 aaPredicted RBP4.27□□□□□ -1.73
CLK1-202ENST00000409403 F11RQ9Y624 299 aaKnown RBP4.27□□□□□ -1.73
CLK1-202ENST00000409403 EXPH5Q8NEV8 1989 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 NCKAP5O14513 1909 aa4.27□□□□□ -1.73
CLK1-202ENST00000409403 TRBV25-1A0A075B6N4 114 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 TRBV6-1A0A0K0K1D8 114 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 C19orf71A6NCJ1 209 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 C15orf61A6NNL5 157 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ZFAND5O76080 213 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 DPM2O94777 84 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 OR2H2O95918 312 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 NCR2O95944 276 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 NGFP01138 241 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 LTAP01374 205 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 IGLV3-19P01714 112 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 IGKCP01834 107 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 CSN3P07498 182 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 HSPE1P61604 102 aaKnown RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 MOB3BQ86TA1 216 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 PCP2Q8IVA1 136 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 PATE1Q8WXA2 126 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 TMEM158Q8WZ71 300 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 LINC00479Q96M42 142 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ZNF488Q96MN9 340 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 UBTD1Q9HAC8 227 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 PRNDQ9UKY0 176 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 EPDR1Q9UM22 224 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 TIMM8BQ9Y5J9 83 aaPredicted RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 ARHGAP21Q5T5U3 1957 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 DYSFO75923 2080 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 NCOA6Q14686 2063 aaPredicted RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 A0A087WX48 190 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 A0A1W2PPI3 338 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 NCBP2LA6PVI3 153 aaKnown RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 C19orf84I3L1E1 186 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 K7ERJ3 54 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 BRI3O95415 125 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 IGHV4-34P06331 123 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 B4GALT1P15291 398 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ZNF137PP52743 207 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 DSCR4P56555 118 aaPredicted RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 C3AR1Q16581 482 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 TBC1D28Q2M2D7 210 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 GUSBP11Q6P575 273 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ACP7Q6ZNF0 438 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ZNF493Q6ZR52 646 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 AAED1Q7RTV5 226 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 YRDCQ86U90 279 aaKnown RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 PPP1R27Q86WC6 154 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 ORMDL3Q8N138 153 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 SLC25A45Q8N413 288 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 DNAJC30Q96LL9 226 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 S1PR3Q99500 378 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 HIST1H4GQ99525 98 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 MCRIP2Q9BUT9 160 aaKnown RBP4.26□□□□□ -1.73
CLK1-202ENST00000409403 FBXL15Q9H469 300 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 SELENOKQ9Y6D0 94 aa4.26□□□□□ -1.73
CLK1-202ENST00000409403 WNK1Q9H4A3 2382 aa4.25□□□□□ -1.73
CLK1-202ENST00000409403 AKAP6Q13023 2319 aa4.25□□□□□ -1.73
CLK1-202ENST00000409403 PRKDCP78527 4128 aaKnown RBP4.25□□□□□ -1.73
CLK1-202ENST00000409403 C12orf77C9JDV5 145 aa4.25□□□□□ -1.73
CLK1-202ENST00000409403 FCGR3BO75015 233 aa4.25□□□□□ -1.73
CLK1-202ENST00000409403 INSL3P51460 131 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms