RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 NF1P21359 2839 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 F6UB75 175 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 TSTD3H0UI37 97 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 Q6ZQT7 251 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 C9orf47Q6ZRZ4 202 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 SMPXQ9UHP9 88 aa9.11□□□□□ -0.95
USP3-202ENST00000380324 CTRLP40313 264 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 PMCHL1Q16048 86 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 MTORP42345 2549 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 AKAP9Q99996 3911 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 RPS20P60866 119 aaKnown RBP9.1□□□□□ -0.95
USP3-202ENST00000380324 HIST1H1AQ02539 215 aaPredicted RBP9.1□□□□□ -0.95
USP3-202ENST00000380324 TWIST1Q15672 202 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 PRR9Q5T870 116 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 ZNF664Q8N3J9 261 aa9.1□□□□□ -0.95
USP3-202ENST00000380324 FASNP49327 2511 aaKnown RBP9.09□□□□□ -0.95
USP3-202ENST00000380324 IGHV4OR15-8A0A075B7B6 117 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 A0A087WW49 117 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 A0A1B0GW15 77 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 TMEM89A2RUT3 159 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 M0R2Z0 102 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 CSN3P07498 182 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 IGLC6P0CF74 106 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 SYNJ2BPP57105 145 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 PKIAP61925 76 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 LINC01559Q495D7 138 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 NIT1Q86X76 327 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 ZNF575Q86XF7 245 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 WFDC3Q8IUB2 231 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 AMN1Q8IY45 258 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 OR10J6PQ8NGY7 276 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 URB1-AS1Q96HZ7 61 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 CLEC5AQ9NY25 188 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 C11orf21Q9P2W6 132 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 IGKV3D-20A0A0C4DH25 116 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 LGALS1P09382 135 aaKnown RBP9.09□□□□□ -0.95
USP3-202ENST00000380324 TFPI2P48307 235 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 DEFB136Q30KP8 78 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 UFC1Q9Y3C8 167 aa9.09□□□□□ -0.95
USP3-202ENST00000380324 SORL1Q92673 2214 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 ELANEP08246 267 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 KHDC1LQ5JSQ8 128 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 MSRB1Q9NZV6 116 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 HECTD1Q9ULT8 2610 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 K7EMT4 169 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 HIST2H2BDQ6DRA6 164 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 C18orf65Q6ZTR6 163 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 GATD1Q8NB37 220 aa9.08□□□□□ -0.96
USP3-202ENST00000380324 SETD2Q9BYW2 2564 aaPredicted RBP9.07□□□□□ -0.96
USP3-202ENST00000380324 D6R8Y8 96 aa9.07□□□□□ -0.96
USP3-202ENST00000380324 HOXD3P31249 432 aaPredicted RBP9.07□□□□□ -0.96
USP3-202ENST00000380324 ZNF493Q6ZR52 646 aa9.07□□□□□ -0.96
USP3-202ENST00000380324 MYOZ3Q8TDC0 251 aa9.07□□□□□ -0.96
USP3-202ENST00000380324 OVOL1O14753 267 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 SRSF2Q01130 221 aaKnown RBP9.06□□□□□ -0.96
USP3-202ENST00000380324 KLHDC1Q8N7A1 406 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 DCANP1Q8TF63 244 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 UBE2E2Q96LR5 201 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 AGRNO00468 2067 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 C3orf79P0CE67 100 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 DDTP30046 118 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 TDRG1Q3Y452 100 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 FAM104BQ5XKR9 115 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 OR8A1Q8NGG7 326 aa9.06□□□□□ -0.96
USP3-202ENST00000380324 TIMM8BQ9Y5J9 83 aaPredicted RBP9.06□□□□□ -0.96
USP3-202ENST00000380324 IGHV1-24A0A0C4DH33 117 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 DNAJC9-AS1A6NH13 148 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 KIR3DS1Q14943 382 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 ZFAND2AQ8N6M9 145 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 LINC00477Q96M19 166 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 MS4A6AQ9H2W1 248 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 WNK1Q9H4A3 2382 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 SMKR1H3BMG3 65 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 NCR2O95944 276 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 ZNF688P0C7X2 276 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 LINC00614P0C842 121 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 OR10AG1Q8NH19 301 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 DUX3Q96PT4 197 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 PPP1R14DQ9NXH3 145 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 PAM16Q9Y3D7 125 aa9.05□□□□□ -0.96
USP3-202ENST00000380324 H3BVH4 76 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 SLURP1P55000 103 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 MRPL51Q4U2R6 128 aaKnown RBP9.04□□□□□ -0.96
USP3-202ENST00000380324 Q8N2B8 174 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 Q8N976 141 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 WFDC12Q8WWY7 111 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 CHCHD1Q96BP2 118 aaKnown RBP9.04□□□□□ -0.96
USP3-202ENST00000380324 CNFNQ9BYD5 112 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 LENEPQ9Y5L5 61 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 LOC389332A0A1B0GUA5 103 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 RNASE4P34096 147 aaKnown RBP9.04□□□□□ -0.96
USP3-202ENST00000380324 ID1P41134 155 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 PSMG4Q5JS54 123 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 TEX43Q6ZNM6 134 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 ORMDL3Q8N138 153 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 RNF152Q8N8N0 203 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 PRELID3AQ96N28 172 aa9.04□□□□□ -0.96
USP3-202ENST00000380324 DEFA6Q01524 100 aa9.03□□□□□ -0.96
USP3-202ENST00000380324 KRTAP1-1Q07627 177 aa9.03□□□□□ -0.96
USP3-202ENST00000380324 EBLN2Q6P2I7 272 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms