RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 SPINK8P0C7L1 97 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 PSMB2P49721 201 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 LAGE3Q14657 143 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 Q6ZQT7 251 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 SMAD5-AS1Q9Y6J3 95 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 APC2O95996 2303 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 HOXA3O43365 443 aaPredicted RBP12.3□□□□□ -0.44
CKAP4-201ENST00000378026 IGHG4P01861 327 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 RPL7P18124 248 aaKnown RBP12.3□□□□□ -0.44
CKAP4-201ENST00000378026 MFAP4P55083 255 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 SRSF1Q07955 248 aaKnown RBP eCLIP12.3□□□□□ -0.44
CKAP4-201ENST00000378026 MRAP2Q96G30 205 aa12.3□□□□□ -0.44
CKAP4-201ENST00000378026 MT-ATP8P03928 68 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 IGFL2Q6UWQ7 119 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 ONECUT1Q9UBC0 465 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 A0A087WX48 190 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 OR11H12B2RN74 326 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 FOXI1Q12951 378 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 PSMG4Q5JS54 123 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 OR11H1Q8NG94 326 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 OR11H2Q8NH07 326 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 IGLV2-18A0A075B6J9 118 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 C3orf36Q3SXR2 165 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 DEFB104AQ8WTQ1 72 aa12.29□□□□□ -0.44
CKAP4-201ENST00000378026 RNASE6Q93091 150 aaKnown RBP12.29□□□□□ -0.44
CKAP4-201ENST00000378026 RALYQ9UKM9 306 aaKnown RBP12.29□□□□□ -0.44
CKAP4-201ENST00000378026 TRBV7-3A0A075B6L6 115 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 LINC01549A6NIU2 74 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 LINC01548A6NM66 108 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 VSTM5A8MXK1 200 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 MORN3Q6PF18 240 aaPredicted RBP12.28□□□□□ -0.44
CKAP4-201ENST00000378026 NFE4Q86UQ8 179 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 SVIPQ8NHG7 77 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 ABCA4P78363 2273 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 J3KRW8 73 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 ZFP2Q6ZN57 461 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 C8orf86Q6ZUL3 223 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 FANCD2OSQ96PS1 177 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 RAB1BQ9H0U4 201 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 C21orf62Q9NYP8 219 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 C11orf21Q9P2W6 132 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 RELNP78509 3460 aa12.28□□□□□ -0.44
CKAP4-201ENST00000378026 HLA-DRB4P13762 266 aa12.27□□□□□ -0.44
CKAP4-201ENST00000378026 HLA-DRB4X5D2U9 266 aa12.27□□□□□ -0.44
CKAP4-201ENST00000378026 IGHV3-49A0A0A0MS15 119 aa12.27□□□□□ -0.45
CKAP4-201ENST00000378026 IGKV3D-20A0A0C4DH25 116 aa12.27□□□□□ -0.45
CKAP4-201ENST00000378026 MYMXA0A1B0GTQ4 84 aa12.27□□□□□ -0.45
CKAP4-201ENST00000378026 THBDP07204 575 aa12.27□□□□□ -0.45
CKAP4-201ENST00000378026 SMCPP49901 116 aaPredicted RBP12.27□□□□□ -0.45
CKAP4-201ENST00000378026 TAL2Q16559 108 aa12.27□□□□□ -0.45
CKAP4-201ENST00000378026 ASH1LQ9NR48 2969 aaKnown RBP12.27□□□□□ -0.45
CKAP4-201ENST00000378026 F8W735 103 aaPredicted RBP12.26□□□□□ -0.45
CKAP4-201ENST00000378026 NBR2O15453 112 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 SCGB1D4Q6XE38 83 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 VKORC1Q9BQB6 163 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 LINC01546A6NGU7 62 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 TCTEX1D4Q5JR98 221 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 CDIP1Q9H305 208 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 SRSF9Q13242 221 aaKnown RBP eCLIP12.26□□□□□ -0.45
CKAP4-201ENST00000378026 FHL3Q13643 280 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 SPANXN1Q5VSR9 72 aa12.26□□□□□ -0.45
CKAP4-201ENST00000378026 C1QTNF4Q9BXJ3 329 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 NBASA2RRP1 2371 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 PLNP26678 52 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 NRACQ8N912 160 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 CNFNQ9BYD5 112 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 RAXQ9Y2V3 346 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 DCHS2Q6V1P9 2916 aa12.25□□□□□ -0.45
CKAP4-201ENST00000378026 KLRD1Q13241 179 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 SCGB3A1Q96QR1 104 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 KAAG1Q9UBP8 84 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 TTC28Q96AY4 2481 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 H3BVH4 76 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 H7C1H1 209 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 LGALS1P09382 135 aaKnown RBP12.24□□□□□ -0.45
CKAP4-201ENST00000378026 GATA3P23771 443 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 XGP55808 180 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 COX8CQ7Z4L0 72 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 F8VRH5 84 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 NDPQ00604 133 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 TMEM78Q5T7P6 136 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 CFAP126Q5VTH2 177 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 KLHL30-AS1Q8NEE0 82 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 DLX4Q92988 240 aaPredicted RBP12.24□□□□□ -0.45
CKAP4-201ENST00000378026 PLEKHB2Q96CS7 222 aa12.24□□□□□ -0.45
CKAP4-201ENST00000378026 IGLV11-55A0A075B6I3 123 aa12.23□□□□□ -0.45
CKAP4-201ENST00000378026 ZNF815PA8K554 130 aa12.23□□□□□ -0.45
CKAP4-201ENST00000378026 EMP1P54849 157 aa12.23□□□□□ -0.45
CKAP4-201ENST00000378026 ACACAQ13085 2346 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 LINC01559Q495D7 138 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 PRADC1Q9BSG0 188 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 A0A0G2JNJ9 132 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 CTSGP08311 255 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 Q9UFV3 132 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 AGPAT4-IT1Q9H0P7 198 aa12.22□□□□□ -0.45
CKAP4-201ENST00000378026 E7EQL1 145 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 SLC25A16P16260 332 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 Q6ZUT4 128 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 TMEM190Q8WZ59 177 aa12.21□□□□□ -0.45
CKAP4-201ENST00000378026 RNF183Q96D59 192 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms