RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 RSPO4Q2I0M5 234 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 ZCCHC24Q8N2G6 241 aaKnown RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 PYGO2Q9BRQ0 406 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 ZNF837Q96EG3 531 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 MRPL51Q4U2R6 128 aaKnown RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 MGAMO43451 1857 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 IGHV1OR15-1A0A075B7D0 117 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 RHOHQ15669 191 aa9.4□□□□□ -0.9
VPS13A-205ENST00000376636 ZNF672Q499Z4 452 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 PAQR4Q8N4S7 273 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-205ENST00000376636 NREPQ16612 68 aa9.4□□□□□ -0.91
VPS13A-205ENST00000376636 SP7Q8TDD2 431 aaPredicted RBP9.4□□□□□ -0.91
VPS13A-205ENST00000376636 ETDCA0A1B0GVM5 59 aa9.4□□□□□ -0.91
VPS13A-205ENST00000376636 IGKV1-5P01602 117 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 PAX9P55771 341 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 C8orf49Q96NF6 230 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 MRPL35Q9NZE8 188 aaKnown RBP9.39□□□□□ -0.91
VPS13A-205ENST00000376636 SPINK13Q1W4C9 94 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 FOXF2Q12947 444 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 C4orf48Q5BLP8 95 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 C10orf55Q5SWW7 151 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 HIGD2BQ4VC39 106 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 EIF4EBP2Q13542 120 aaPredicted RBP9.39□□□□□ -0.91
VPS13A-205ENST00000376636 C12orf74Q32Q52 190 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 Q6ZS49 121 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 LINC01620Q4KN68 170 aa9.39□□□□□ -0.91
VPS13A-205ENST00000376636 ZNRF2Q8NHG8 242 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 PRB4P10163 310 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-205ENST00000376636 LINC01619G3V211 115 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 CFC1BP0CG36 223 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 CFC1P0CG37 223 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 DEFB131AP59861 70 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 PRR31Q5SQ13 230 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 ZMAT4Q9H898 229 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 C15orf62A8K5M9 175 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 TMEM14BQ9NUH8 114 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 NTN5Q8WTR8 489 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-205ENST00000376636 XCL2Q9UBD3 114 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 TMEM213A2RRL7 107 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 COL18A1P39060 1754 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 SPTSSBQ8NFR3 76 aa9.38□□□□□ -0.91
VPS13A-205ENST00000376636 CFHR3Q02985 330 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 PRR15LQ9BU68 103 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 IGHV3-16A0A0C4DH30 117 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 RPL18AQ02543 176 aaKnown RBP9.37□□□□□ -0.91
VPS13A-205ENST00000376636 SIGLEC8Q9NYZ4 499 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 OVOL3O00110 214 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 YPEL3P61236 119 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-205ENST00000376636 FAM231DQ6ZW35 169 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 OPRPNQ99935 248 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-205ENST00000376636 JMJD7-PLA2G4BH0Y9G9 81 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 PRB1P04280 392 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 SAA4P35542 130 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 IL15RAQ13261 267 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 RS1O15537 224 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 NUP210Q8TEM1 1887 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-205ENST00000376636 TRAV3A0A0B4J244 114 aa9.37□□□□□ -0.91
VPS13A-205ENST00000376636 C8orf86Q6ZUL3 223 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 TMEM14CQ9P0S9 112 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 Q6ZWC4 215 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 IGKV1D-8A0A087WSZ0 117 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 SPANXB1Q9NS25 103 aaPredicted RBP9.36□□□□□ -0.91
VPS13A-205ENST00000376636 IGLL1P15814 213 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 COL11A2P13942 1736 aaPredicted RBP9.36□□□□□ -0.91
VPS13A-205ENST00000376636 LINC00473A8K010 186 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 KLK9Q9UKQ9 250 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 TEN1Q86WV5 123 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 ICOSQ9Y6W8 199 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 PRB2P02812 416 aaPredicted RBP9.36□□□□□ -0.91
VPS13A-205ENST00000376636 XCL1P47992 114 aa9.36□□□□□ -0.91
VPS13A-205ENST00000376636 TRAV26-2A0A0B4J265 109 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 ZNF503Q96F45 646 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 COLQQ9Y215 455 aaPredicted RBP9.35□□□□□ -0.91
VPS13A-205ENST00000376636 DYNAPQ8N1N2 210 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 IGHV4-28A0A0C4DH34 117 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 BUB3O43684 328 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 NLRC5Q86WI3 1866 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 TRBV19A0A075B6N1 114 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 CRYGSP22914 178 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 Q9H8V8 135 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 TIRAPP58753 221 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 SH2D6Q7Z4S9 175 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 FGFBP3Q8TAT2 258 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 SPRR3Q9UBC9 169 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 PDE6GP18545 87 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 DEFB125Q8N687 156 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 LYNX1G3V0Z9 82 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 LYNX1P0DP58 116 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 CD177Q8N6Q3 437 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 IGF2BP2-AS1Q96M15 143 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 IGKV2D-24A0A075B6R9 120 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 TRAV12-2A0A075B6T6 113 aa9.35□□□□□ -0.91
VPS13A-205ENST00000376636 RNF152Q8N8N0 203 aa9.34□□□□□ -0.91
VPS13A-205ENST00000376636 MRPL36Q9P0J6 103 aaKnown RBP9.34□□□□□ -0.91
VPS13A-205ENST00000376636 LINC00479Q96M42 142 aa9.34□□□□□ -0.91
VPS13A-205ENST00000376636 PTPRQQ9UMZ3 2332 aa9.34□□□□□ -0.91
VPS13A-205ENST00000376636 ETV2O00321 342 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-205ENST00000376636 AMTNQ6UX39 209 aa9.34□□□□□ -0.91
VPS13A-205ENST00000376636 IGLL5B9A064 214 aa9.34□□□□□ -0.91
VPS13A-205ENST00000376636 IGKV1-39P01597 117 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms