RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GFI1BQ5VTD9 330 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 RBPMS2Q6ZRY4 209 aaKnown RBP10.34□□□□□ -0.75
PTPRF-202ENST00000372405 OR8A1Q8NGG7 326 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 RNF114Q9Y508 228 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 C2CD3Q4AC94 2353 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 TMSB15BA0A087X1C1 80 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 CSN3P07498 182 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 OR10J6PQ8NGY7 276 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 C12orf57Q99622 126 aa10.34□□□□□ -0.75
PTPRF-202ENST00000372405 TMEM189A5PLL7 270 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 IFITM10A6NMD0 228 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 ZNF688P0C7X2 276 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 HOXA5P20719 270 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 HIST1H1AQ02539 215 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-202ENST00000372405 WDR73Q6P4I2 378 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 ATP5L2Q7Z4Y8 100 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 ZFAND2AQ8N6M9 145 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 FAM19A4Q96LR4 140 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 LINC00477Q96M19 166 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 C11orf21Q9P2W6 132 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 TSSC4Q9Y5U2 329 aaPredicted RBP10.33□□□□□ -0.76
PTPRF-202ENST00000372405 F8P00451 2351 aa10.33□□□□□ -0.76
PTPRF-202ENST00000372405 NIPBLQ6KC79 2804 aaeCLIP10.32□□□□□ -0.76
PTPRF-202ENST00000372405 ADARB2-AS1A8MUL3 147 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 FABP5P3A8MUU1 101 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 ID1P41134 155 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 RAB4BP61018 213 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 PRR31Q5SQ13 230 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 SAMD13Q5VXD3 122 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 RASL11AQ6T310 242 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 PEMTQ9UBM1 199 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 LENEPQ9Y5L5 61 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 AGRNO00468 2067 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 CCL24O00175 119 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 TCF21O43680 179 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 MT-ND6P03923 174 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 CAMPP49913 170 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 KRTAP10-3P60369 221 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 SLAQ13239 276 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 COX19Q49B96 90 aa10.32□□□□□ -0.76
PTPRF-202ENST00000372405 BAHCC1Q9P281 2608 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 A0A1B0GUS0 222 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 XKRY2A2RUG3 117 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 M0QZ24 198 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 CRLF1O75462 422 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 HLA-DQA1P01909 254 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 ARMS2P0C7Q2 107 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 KIAA1644Q3SXP7 199 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 LINC01559Q495D7 138 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 PSMG4Q5JS54 123 aa10.31□□□□□ -0.76
PTPRF-202ENST00000372405 SSBP4Q9BWG4 385 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-202ENST00000372405 IGKV3D-20A0A0C4DH25 116 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 S100A8P05109 93 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 HBBP68871 147 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 KIR3DS1Q14943 382 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 COA6Q5JTJ3 125 aaKnown RBP10.3□□□□□ -0.76
PTPRF-202ENST00000372405 TMEM61Q8N0U2 210 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 GRIFINA4D1Z8 144 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 ORM1P02763 201 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 HIST3H2BBQ8N257 126 aa10.3□□□□□ -0.76
PTPRF-202ENST00000372405 J3KRW8 73 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 IGLC6P0CF74 106 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 CD33P20138 364 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 SNRPD3P62318 126 aaKnown RBP10.29□□□□□ -0.76
PTPRF-202ENST00000372405 PDZD11Q5EBL8 140 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 LYZL1Q6UWQ5 148 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 TPPP3Q9BW30 176 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 TP53TG3Q9ULZ0 132 aa10.29□□□□□ -0.76
PTPRF-202ENST00000372405 A0A1B0GUT8 65 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 APCSP02743 223 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 SMIM6P0DI80 62 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 CRISP2P16562 243 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 DEFB114Q30KQ6 69 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 Q6AWC8 147 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 APRG1Q8IVJ8 170 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 A0A0J9YX75 114 aa10.28□□□□□ -0.76
PTPRF-202ENST00000372405 RPS20P60866 119 aaKnown RBP10.28□□□□□ -0.76
PTPRF-202ENST00000372405 MUC21A0A0G2JKD1 596 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 TRBV7-9A0A0J9YWB2 115 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 MUC21A0A140T8X8 626 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 PCP4L1A6NKN8 68 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 F2Z2F3 143 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 CTRLP40313 264 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 LINC00310P59036 64 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 PAFAH1B2P68402 229 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 CD300EQ496F6 205 aaPredicted RBP10.27□□□□□ -0.77
PTPRF-202ENST00000372405 MUC21Q5SSG8 566 aa10.27□□□□□ -0.77
PTPRF-202ENST00000372405 NUPR1O60356 82 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 TMEM256Q8N2U0 113 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 FER1L6-AS1Q8NA97 138 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 TENM1Q9UKZ4 2725 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 CYSRT1A8MQ03 144 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 KLLNB2CW77 178 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 GPX1P07203 203 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 SRIP30626 198 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 S100A12P80511 92 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 DYNLRB2Q8TF09 96 aa10.26□□□□□ -0.77
PTPRF-202ENST00000372405 TRAV2A0A0B4J234 112 aa10.25□□□□□ -0.77
PTPRF-202ENST00000372405 RNASE4P34096 147 aaKnown RBP10.25□□□□□ -0.77
PTPRF-202ENST00000372405 SSTP61278 116 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms