RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 TRBV6-6A0A0A6YYG2 114 aa12.34□□□□□ -0.43
COL5A1-201ENST00000371817 FAM240AA0A1B0GVK7 77 aa12.34□□□□□ -0.43
COL5A1-201ENST00000371817 USMG5Q96IX5 58 aa12.34□□□□□ -0.43
COL5A1-201ENST00000371817 SHANK3Q9BYB0 1731 aa12.34□□□□□ -0.43
COL5A1-201ENST00000371817 LINC01560Q8TB33 94 aa12.33□□□□□ -0.43
COL5A1-201ENST00000371817 IGKV1-12A0A0C4DH73 117 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 IGKV1D-12P01611 117 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 RNF5Q99942 180 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 LINC00473A8K010 186 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 Q6ZS49 121 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 IGHV1-3A0A0C4DH29 117 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 WIPF3A6NGB9 483 aa12.33□□□□□ -0.44
COL5A1-201ENST00000371817 EFNA4P52798 201 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 PTPN13Q12923 2485 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 FAM223BA6NKX1 122 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 DKK1O94907 266 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 FAM223AQ8IWN6 122 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 MPLKIPQ8TAP9 179 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 KLF2Q9Y5W3 355 aaPredicted RBP12.32□□□□□ -0.44
COL5A1-201ENST00000371817 IGKV1-27A0A075B6S5 117 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 FAM27E3Q08E93 113 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 ZCCHC24Q8N2G6 241 aaKnown RBP12.32□□□□□ -0.44
COL5A1-201ENST00000371817 C20orf78Q9BR46 151 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 PYGO2Q9BRQ0 406 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 TFF1P04155 84 aa12.32□□□□□ -0.44
COL5A1-201ENST00000371817 SEC61GP60059 68 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 SLC25A45Q8N413 288 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 Q8NFD4 153 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 UQCRQO14949 82 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 NXPH4O95158 308 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 LTBRP36941 435 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 SIGLEC9Q9Y336 463 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 PROP1O75360 226 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 TMEM200BQ69YZ2 307 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 BRWD3Q6RI45 1802 aa12.31□□□□□ -0.44
COL5A1-201ENST00000371817 C5orf64Q2M2E5 130 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 ZNF747Q9BV97 191 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 TMEM14BQ9NUH8 114 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 RNF183Q96D59 192 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 QRFPP83859 136 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 TFF2Q03403 129 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 SRRM5B3KS81 715 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 IGHV1-8P0DP01 117 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 IGFL4Q6B9Z1 124 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 PATE3B3GLJ2 98 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 NDUFB8O95169 186 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 E9PQ18 207 aa12.3□□□□□ -0.44
COL5A1-201ENST00000371817 WIPF2Q8TF74 440 aaPredicted RBP12.3□□□□□ -0.44
COL5A1-201ENST00000371817 MSRB2Q9Y3D2 182 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 IGHV1OR15-1A0A075B7D0 117 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 RPL35AP18077 110 aaKnown RBP12.29□□□□□ -0.44
COL5A1-201ENST00000371817 NDUFC2-KCTD14E9PQ53 114 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 H0YGX0 51 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 CXCL5P42830 114 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 COA6Q5JTJ3 125 aaKnown RBP12.29□□□□□ -0.44
COL5A1-201ENST00000371817 Q6ZUT4 128 aa12.29□□□□□ -0.44
COL5A1-201ENST00000371817 DAZ1Q9NQZ3 744 aaKnown RBP12.29□□□□□ -0.44
COL5A1-201ENST00000371817 MINOS1Q5TGZ0 78 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 Q6ZRM9 215 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 MINOS1-NBL1R4GNA1 71 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 TRBV19A0A075B6N1 114 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 SPAARA0A1B0GVQ0 90 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 SIP14410 1827 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 TANC1Q9C0D5 1861 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 UNQ6494/PRO21346Q6UXR6 183 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 PRR19A6NJB7 356 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 TDRG1Q3Y452 100 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 A0A0G2JRQ6 117 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 PSPNO60542 156 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 PTPRBP23467 1997 aa12.28□□□□□ -0.44
COL5A1-201ENST00000371817 DEFB105AQ8NG35 78 aa12.27□□□□□ -0.44
COL5A1-201ENST00000371817 VSIG2Q96IQ7 327 aa12.27□□□□□ -0.44
COL5A1-201ENST00000371817 FNDC1Q4ZHG4 1894 aaPredicted RBP12.27□□□□□ -0.45
COL5A1-201ENST00000371817 NREPQ16612 68 aa12.27□□□□□ -0.45
COL5A1-201ENST00000371817 UBE2E2Q96LR5 201 aa12.27□□□□□ -0.45
COL5A1-201ENST00000371817 CRYGSP22914 178 aa12.27□□□□□ -0.45
COL5A1-201ENST00000371817 PLXNA4Q9HCM2 1894 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 BUB1B-PAK6H3BSN5 160 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 ITGBL1O95965 494 aaPredicted RBP12.26□□□□□ -0.45
COL5A1-201ENST00000371817 RHOHQ15669 191 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 TMEM219Q86XT9 240 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 SMRP1Q8NCR6 262 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 VMO1Q7Z5L0 202 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 ZC2HC1AQ96GY0 325 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 OOSP1A8MZH6 123 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 PRR25Q96S07 402 aa12.26□□□□□ -0.45
COL5A1-201ENST00000371817 ZNF106Q9H2Y7 1883 aaKnown RBP12.26□□□□□ -0.45
COL5A1-201ENST00000371817 Q9H8V8 135 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 JMJD7-PLA2G4BH0Y9G9 81 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 HIGD1BQ9P298 99 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 IGKV1-16P04430 117 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 DYNAPQ8N1N2 210 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 LGALS9O00182 355 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 DEFB130BP0DP73 79 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 DEFB130AP0DP74 79 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 RHPN1-AS1Q9BWJ2 59 aa12.25□□□□□ -0.45
COL5A1-201ENST00000371817 SLC25A29Q8N8R3 303 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 FAM236DA0A1B0GTK5 79 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 FAM236CP0DP71 79 aa12.24□□□□□ -0.45
COL5A1-201ENST00000371817 IGHV3-16A0A0C4DH30 117 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms