RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 NCKAP5O14513 1909 aa10.99□□□□□ -0.65
COL6A1-201ENST00000361866 LOXL1Q08397 574 aaPredicted RBP10.98□□□□□ -0.65
COL6A1-201ENST00000361866 NEGR1Q7Z3B1 354 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 GEMIN7Q9H840 131 aaKnown RBP10.98□□□□□ -0.65
COL6A1-201ENST00000361866 PRTN3P24158 256 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 RNF5Q99942 180 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 SPRY4Q9C004 299 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 A0A087WWL8 130 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 THBDP07204 575 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 SEM1Q6ZVN7 128 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 DTX2Q86UW9 622 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 LINC00311Q8N616 119 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 C10orf142B7Z368 130 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 SPINK8P0C7L1 97 aa10.98□□□□□ -0.65
COL6A1-201ENST00000361866 NPC2P61916 151 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 SCRT2Q9NQ03 307 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 NPIPB6E9PJ23 425 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 H7C1H1 209 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 CTRLP40313 264 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 LINC01545Q5VT33 79 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 RAX2Q96IS3 184 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 TMEM14CQ9P0S9 112 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 IGKV1D-37A0A075B6S9 117 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 ATP5J2P56134 94 aa10.97□□□□□ -0.65
COL6A1-201ENST00000361866 ANKRD11Q6UB99 2663 aaPredicted RBP10.97□□□□□ -0.65
COL6A1-201ENST00000361866 C22orf34Q6ZV56 151 aa10.96□□□□□ -0.65
COL6A1-201ENST00000361866 PPP1R17O96001 155 aa10.96□□□□□ -0.66
COL6A1-201ENST00000361866 MRAP2Q96G30 205 aa10.96□□□□□ -0.66
COL6A1-201ENST00000361866 VCX2Q9H322 139 aa10.96□□□□□ -0.66
COL6A1-201ENST00000361866 TEX48A0A1B0GUV7 120 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 CGB3P0DN86 165 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 CGB7P0DN87 165 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 PLNP26678 52 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 SNRPD3P62318 126 aaKnown RBP10.95□□□□□ -0.66
COL6A1-201ENST00000361866 DYNLRB2Q8TF09 96 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 ATP6V0BQ99437 205 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 USP9XQ93008 2570 aaPredicted RBP10.95□□□□□ -0.66
COL6A1-201ENST00000361866 ABCA2Q9BZC7 2435 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 A8MWV9 139 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 ATP6V0E1O15342 81 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 ZNF688P0C7X2 276 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 RBX1P62877 108 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 SH2D6Q7Z4S9 175 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 IGHV3-73A0A0B4J1V6 119 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 C7orf69Q9H7B7 122 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 TRAV12-3A0A0B4J271 114 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 LINC01549A6NIU2 74 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 FCN3O75636 299 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 C1orf122Q6ZSJ8 110 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 DYNAPQ8N1N2 210 aa10.95□□□□□ -0.66
COL6A1-201ENST00000361866 K7EIM0 57 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 SLC25A16P16260 332 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 MEIG1Q5JSS6 88 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 COX6B1P14854 86 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 SUMO2P61956 95 aaKnown RBP10.94□□□□□ -0.66
COL6A1-201ENST00000361866 C2orf66Q6UXQ4 117 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 C1orf159Q96HA4 380 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 KLF12Q9Y4X4 402 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 CPAMD8Q8IZJ3 1885 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 TRAV41A0A0B4J266 112 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 FXYD2P54710 66 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 NPFFR1Q9GZQ6 430 aa10.94□□□□□ -0.66
COL6A1-201ENST00000361866 GAGE12HA6NDE8 117 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 SAA4P35542 130 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 GAGE2BQ13066 116 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 DPH3P1Q9H4G8 78 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 TNFRSF18Q9Y5U5 241 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 DLX4Q92988 240 aaPredicted RBP10.93□□□□□ -0.66
COL6A1-201ENST00000361866 MBD6Q96DN6 1003 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 MSRB2Q9Y3D2 182 aa10.93□□□□□ -0.66
COL6A1-201ENST00000361866 TRBV25-1A0A075B6N4 114 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 A0A1B0GXF2 115 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 IGLV2-23P01705 113 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 CR1LQ2VPA4 569 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 ZFAND6Q6FIF0 208 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 VCANP13611 3396 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 I3L2K1 104 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 Q8N8P6 123 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 GRNP28799 593 aaKnown RBP10.92□□□□□ -0.66
COL6A1-201ENST00000361866 NBL1P41271 181 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 SPATA12Q7Z6I5 190 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 PIP4P1Q86T03 277 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 LRP4O75096 1905 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 C19orf71A6NCJ1 209 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 TCF15Q12870 199 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 FOXE3Q13461 319 aa10.92□□□□□ -0.66
COL6A1-201ENST00000361866 PAPPA-AS1Q5QFB9 102 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 SRSF8Q9BRL6 282 aaKnown RBP10.91□□□□□ -0.66
COL6A1-201ENST00000361866 TNRC6AQ8NDV7 1962 aaKnown RBP10.91□□□□□ -0.66
COL6A1-201ENST00000361866 VPS13AQ96RL7 3174 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 PRSS47A8MTI9 375 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 C3orf36Q3SXR2 165 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 PRADC1Q9BSG0 188 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 DSCAMO60469 2012 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 AGPAT4-IT1Q9H0P7 198 aa10.91□□□□□ -0.66
COL6A1-201ENST00000361866 ZNF876PQ49A33 203 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 C8orf86Q6ZUL3 223 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 VWC2LB2RUY7 222 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms