RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CFHR3Q02985 330 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 RHOHQ15669 191 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 Q86TA4 180 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 FAM236AA0A1B0GUQ0 79 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 FAM236BA0A1B0GV22 79 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 SDHAF1A6NFY7 115 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 TMEM200BQ69YZ2 307 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 LINC01619G3V211 115 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 CFHR1Q03591 330 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 C1orf53Q5VUE5 145 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 IGF2BP2-AS1Q96M15 143 aa14.31□□□□□ -0.12
SMAD4-201ENST00000342988 COLCA2A8K830 154 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 H0Y9J4 135 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 TMEM256-PLSCR3K7ERE1 68 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 FGF16O43320 207 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 CTHRC1Q96CG8 243 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 ADAMTS7Q9UKP4 1686 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 USP17L23D6RBM5 183 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 KLF2Q9Y5W3 355 aaPredicted RBP14.3□□□□□ -0.12
SMAD4-201ENST00000342988 SLC25A45Q8N413 288 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 CXCL5P42830 114 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 SIGLEC9Q9Y336 463 aa14.3□□□□□ -0.12
SMAD4-201ENST00000342988 ZNF883P0CG24 379 aa14.29□□□□□ -0.12
SMAD4-201ENST00000342988 ZNF664Q8N3J9 261 aa14.29□□□□□ -0.12
SMAD4-201ENST00000342988 GATA4P43694 442 aa14.29□□□□□ -0.12
SMAD4-201ENST00000342988 COX7B2Q8TF08 81 aa14.29□□□□□ -0.12
SMAD4-201ENST00000342988 FAM240AA0A1B0GVK7 77 aa14.29□□□□□ -0.12
SMAD4-201ENST00000342988 ATP5EP56381 51 aaPredicted RBP14.29□□□□□ -0.12
SMAD4-201ENST00000342988 IGKV1D-13A0A0B4J2D9 117 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 IGKV1-13P0DP09 117 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 XCL1P47992 114 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 H0YJW9 148 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 C20orf78Q9BR46 151 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 IGHV1OR15-1A0A075B7D0 117 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 KIR2DL5BQ8NHK3 375 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 H0YIZ8 118 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 ZNRF2Q8NHG8 242 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 ZNF492Q9P255 531 aa14.28□□□□□ -0.12
SMAD4-201ENST00000342988 IGHV3-16A0A0C4DH30 117 aa14.27□□□□□ -0.12
SMAD4-201ENST00000342988 SPINK13Q1W4C9 94 aa14.27□□□□□ -0.12
SMAD4-201ENST00000342988 DEFB131AP59861 70 aa14.27□□□□□ -0.12
SMAD4-201ENST00000342988 LTAP01374 205 aa14.27□□□□□ -0.12
SMAD4-201ENST00000342988 ZNF493Q6ZR52 646 aa14.27□□□□□ -0.12
SMAD4-201ENST00000342988 ZFP36L1Q07352 338 aaKnown RBP14.27□□□□□ -0.13
SMAD4-201ENST00000342988 XCL2Q9UBD3 114 aa14.27□□□□□ -0.13
SMAD4-201ENST00000342988 WBP1Q96G27 269 aa14.27□□□□□ -0.13
SMAD4-201ENST00000342988 DOPEY1Q5JWR5 2465 aa14.27□□□□□ -0.13
SMAD4-201ENST00000342988 FAM208BQ5VWN6 2430 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 HOXB4P17483 251 aaPredicted RBP14.26□□□□□ -0.13
SMAD4-201ENST00000342988 RS1O15537 224 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 GNLYP22749 145 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 RNF183Q96D59 192 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 SHANK2-AS3Q9BTD1 123 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 TRAV3A0A0B4J244 114 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 TRBV12-3P01733 135 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 C3orf22Q8N5N4 141 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 ABCA2Q9BZC7 2435 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 PAX9P55771 341 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 PRSS57Q6UWY2 283 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.26□□□□□ -0.13
SMAD4-201ENST00000342988 TMEM178BH3BS89 294 aa14.26□□□□□ -0.13
SMAD4-201ENST00000342988 SMIM27A0A1W2PRY6 76 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 SP7Q8TDD2 431 aaPredicted RBP14.25□□□□□ -0.13
SMAD4-201ENST00000342988 FOXE3Q13461 319 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 DYNAPQ8N1N2 210 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 IGFBP6P24592 240 aaPredicted RBP14.25□□□□□ -0.13
SMAD4-201ENST00000342988 CLPSL2Q6UWE3 100 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 PYGO2Q9BRQ0 406 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 FAM219BQ5XKK7 198 aa14.25□□□□□ -0.13
SMAD4-201ENST00000342988 ZCCHC24Q8N2G6 241 aaKnown RBP14.25□□□□□ -0.13
SMAD4-201ENST00000342988 Q6ZWC4 215 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 SEM1Q6ZVN7 128 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 NRTNQ99748 197 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 RFPL3SP0C7P2 107 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 RNF152Q8N8N0 203 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 LINC00527Q9UJ94 153 aa14.24□□□□□ -0.13
SMAD4-201ENST00000342988 MST1LQ2TV78 715 aa14.23□□□□□ -0.13
SMAD4-201ENST00000342988 ZNF672Q499Z4 452 aaPredicted RBP14.23□□□□□ -0.13
SMAD4-201ENST00000342988 DAZ2Q13117 558 aaKnown RBP14.23□□□□□ -0.13
SMAD4-201ENST00000342988 DAZ4Q86SG3 579 aaKnown RBP14.23□□□□□ -0.13
SMAD4-201ENST00000342988 DAZ3Q9NR90 486 aaKnown RBP14.23□□□□□ -0.13
SMAD4-201ENST00000342988 SRRM5B3KS81 715 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 NDUFA4O00483 81 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 SMIM10L1P0DMW3 83 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 SMIM10Q96HG1 83 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 MRPL51Q4U2R6 128 aaKnown RBP14.22□□□□□ -0.13
SMAD4-201ENST00000342988 TM2D2Q9BX73 214 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 IGKV1OR2-108A0A075B7D4 117 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 LAIR2Q6ISS4 152 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 IGHV4-4A0A075B6R2 117 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 IGKV1-39P01597 117 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 IGKV1D-39P04432 117 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 PTPRSQ13332 1948 aa14.22□□□□□ -0.13
SMAD4-201ENST00000342988 COL5A3P25940 1745 aaPredicted RBP14.21□□□□□ -0.13
SMAD4-201ENST00000342988 IGHV1-46P01743 117 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 CSRP2Q16527 193 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 DUX4L9Q6RFH8 374 aaPredicted RBP14.21□□□□□ -0.13
SMAD4-201ENST00000342988 C9orf106Q8NAJ2 232 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 POLR3KQ9Y2Y1 108 aaPredicted RBP14.21□□□□□ -0.13
SMAD4-201ENST00000342988 NDUFC2-KCTD14E9PQ53 114 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms