RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 WT1-ASQ06250 92 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 TCF15Q12870 199 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 DTX1Q86Y01 620 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 CITED1Q99966 193 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 KLF12Q9Y4X4 402 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 FRMPD3Q5JV73 1810 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 NAV2Q8IVL1 2488 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 OVOL3O00110 214 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 PAX1P15863 534 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 Q6ZR03 302 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 PRADC1Q9BSG0 188 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 IGHV3-38A0A0C4DH36 116 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 H3BUX3 64 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 AZU1P20160 251 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 IL17RELQ6ZVW7 336 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 TRGV9Q99603 122 aa6.99□□□□□ -1.29
RTN3-202ENST00000339997 TRAV41A0A0B4J266 112 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.98□□□□□ -1.29
RTN3-202ENST00000339997 GATA1P15976 413 aaPredicted RBP6.98□□□□□ -1.29
RTN3-202ENST00000339997 C5orf64Q2M2E5 130 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 VMO1Q7Z5L0 202 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 C3orf56Q8N813 242 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 TLN1Q9Y490 2541 aaKnown RBP6.98□□□□□ -1.29
RTN3-202ENST00000339997 TRAV12-2A0A075B6T6 113 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 E9PQ18 207 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 NPYP01303 97 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 GAGE1Q13065 139 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 USP9XQ93008 2570 aaPredicted RBP6.98□□□□□ -1.29
RTN3-202ENST00000339997 CFHR3Q02985 330 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 C2orf66Q6UXQ4 117 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 TP53TG1Q9Y2A0 90 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 TMEM238C9JI98 176 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 MRPL51Q4U2R6 128 aaKnown RBP6.98□□□□□ -1.29
RTN3-202ENST00000339997 RASL11AQ6T310 242 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 PRIMA1Q86XR5 153 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 KLK9Q9UKQ9 250 aa6.98□□□□□ -1.29
RTN3-202ENST00000339997 TEX48A0A1B0GUV7 120 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 YPEL3P61236 119 aaPredicted RBP6.97□□□□□ -1.29
RTN3-202ENST00000339997 IL15RAQ13261 267 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 SIGLEC8Q9NYZ4 499 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 TP73-AS1Q9UF72 201 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 MRPS18CQ9Y3D5 142 aaKnown RBP6.97□□□□□ -1.29
RTN3-202ENST00000339997 FAM90A9PA6NNJ1 464 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 BUB1B-PAK6H3BSN5 160 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 HLA-DRB4P13762 266 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 RPL35AP18077 110 aaKnown RBP6.97□□□□□ -1.29
RTN3-202ENST00000339997 HLA-DRB4X5D2U9 266 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 NDUFB8O95169 186 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 PFN2P35080 140 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 FAM104BQ5XKR9 115 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 PRSS22Q9GZN4 317 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 NOTCH4Q99466 2003 aa6.97□□□□□ -1.29
RTN3-202ENST00000339997 C9orf118A6NHY6 69 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 NTN3O00634 580 aaPredicted RBP6.96□□□□□ -1.29
RTN3-202ENST00000339997 THBDP07204 575 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 SRSF7Q16629 238 aaKnown RBP eCLIP6.96□□□□□ -1.29
RTN3-202ENST00000339997 TEX43Q6ZNM6 134 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 RHPN1-AS1Q9BWJ2 59 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 PLSCR4Q9NRQ2 329 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 SMPXQ9UHP9 88 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 USP9YO00507 2555 aaPredicted RBP6.96□□□□□ -1.29
RTN3-202ENST00000339997 SPINK13Q1W4C9 94 aa6.96□□□□□ -1.29
RTN3-202ENST00000339997 C17orf82Q86X59 251 aaPredicted RBP6.96□□□□□ -1.29
RTN3-202ENST00000339997 VWA8A3KMH1 1905 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 C5orf47Q569G3 176 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 LY96Q9Y6Y9 160 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 TANC2Q9HCD6 1990 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 GAGE12HA6NDE8 117 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 B5MCH6 92 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 DEFB130BP0DP73 79 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 DEFB130AP0DP74 79 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 FAM120AOSQ5T036 256 aa6.96□□□□□ -1.3
RTN3-202ENST00000339997 TRAV12-1A0A0B4J245 112 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 ITGB1BP1O14713 200 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 RPL36AP83881 106 aaKnown RBP6.95□□□□□ -1.3
RTN3-202ENST00000339997 PRR30Q53SZ7 412 aaPredicted RBP6.95□□□□□ -1.3
RTN3-202ENST00000339997 RPL36ALQ969Q0 106 aaKnown RBP6.95□□□□□ -1.3
RTN3-202ENST00000339997 TRBV6-6A0A0A6YYG2 114 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 VCYO14598 125 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 NSUN5P1Q3KNT7 163 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 RUSC1-AS1Q66K80 236 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 OVOL2Q9BRP0 275 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 A0A0G2JNJ9 132 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 F6UB75 175 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 NXPH4O95158 308 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 FGF6P10767 208 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 CD59P13987 128 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 TEX36Q5VZQ5 186 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 TIMM21Q9BVV7 248 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 TMEM14BQ9NUH8 114 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 Q9UFV3 132 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 SPTBN4Q9H254 2564 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 COX8AP10176 69 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 MRAPQ8TCY5 172 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 PROK2Q9HC23 129 aa6.95□□□□□ -1.3
RTN3-202ENST00000339997 CHKB-CPT1BH3BT56 60 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 SHANK2-AS3Q9BTD1 123 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 MSRB2Q9Y3D2 182 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 DMXL2Q8TDJ6 3036 aa6.94□□□□□ -1.3
RTN3-202ENST00000339997 A0A1W2PPM0 123 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms