RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 A6NDN8 102 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 D6R8Y8 96 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 TEX43Q6ZNM6 134 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 IGKV1-17P01599 117 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 TCTAP57738 103 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 PMCHL2Q9BQD1 86 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 IGHV3-16A0A0C4DH30 117 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 ARL6IP6Q8N6S5 226 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 F6UB75 175 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 SPRY2O43597 315 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 ATP5G1P05496 136 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 CRYGBP07316 175 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 IGLL1P15814 213 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 CKS1BP61024 79 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 CRIP3Q6Q6R5 217 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 ERASQ7Z444 233 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 FANCD2OSQ96PS1 177 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 ADMP35318 185 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 ARID1AO14497 2285 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 EXPH5Q8NEV8 1989 aa7.83□□□□□ -1.16
USP54-201ENST00000339859 PTPRQQ9UMZ3 2332 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 A0A087X0K7 114 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 TRBV12-3P01733 135 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 C20orf144Q9BQM9 153 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 CHTOPQ9Y3Y2 248 aaKnown RBP7.82□□□□□ -1.16
USP54-201ENST00000339859 CACNA1GO43497 2377 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 DNLZQ5SXM8 178 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 ICOSQ9Y6W8 199 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 CCDC140Q96MF4 163 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 C12orf57Q99622 126 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 PCNX3Q9H6A9 2034 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 GGTLC3B5MD39 225 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 LINC00614P0C842 121 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 LINC00479Q96M42 142 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 IGKV3D-20A0A0C4DH25 116 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 LINC01548A6NM66 108 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 I3L3M4 83 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 COX6CP09669 75 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 C17orf77Q96MU5 243 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 U3KQE9 123 aa7.82□□□□□ -1.16
USP54-201ENST00000339859 NCR2O95944 276 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 OR13C6PQ8NH95 151 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 SPATA25Q9BR10 227 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 MRPL16Q9NX20 251 aaKnown RBP7.81□□□□□ -1.16
USP54-201ENST00000339859 A0A1W2PPR1 153 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 CCL18P55774 89 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 TMEM170AQ8WVE7 144 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 HIST1H4GQ99525 98 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 HLA-DMBP28068 263 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 IL15RAQ13261 267 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 Q8N6K4 173 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 TMEM243Q9BU79 118 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 MAP6D1Q9H9H5 199 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 ZNF726P1Q15940 193 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 SPATA45Q537H7 98 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 LINC00469Q8N7U9 141 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 AGPAT4-IT1Q9H0P7 198 aa7.81□□□□□ -1.16
USP54-201ENST00000339859 LTAP01374 205 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 C1orf159Q96HA4 380 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 GSN-AS1Q9NRJ2 163 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 E7EUB6 86 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 C16orf95Q9H693 158 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 MALRD1Q5VYJ5 2156 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 LINC00587B1AMM8 73 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 ZNRF2Q8NHG8 242 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 TRAV2A0A0B4J234 112 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 RBMY1BA6NDE4 496 aaKnown RBP7.8□□□□□ -1.16
USP54-201ENST00000339859 RBMY1EA6NEQ0 496 aaKnown RBP7.8□□□□□ -1.16
USP54-201ENST00000339859 CIDEAO60543 219 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 NDUFS6O75380 124 aaKnown RBP7.8□□□□□ -1.16
USP54-201ENST00000339859 RBMY1DP0C7P1 496 aaKnown RBP7.8□□□□□ -1.16
USP54-201ENST00000339859 RBMY1A1P0DJD3 496 aaKnown RBP7.8□□□□□ -1.16
USP54-201ENST00000339859 RBMY1CP0DJD4 496 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 DEFB135Q30KP9 77 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 RASL10AQ92737 203 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 PCNX1Q96RV3 2341 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 PSMB8P28062 276 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 TMEM61Q8N0U2 210 aa7.8□□□□□ -1.16
USP54-201ENST00000339859 VAMP3Q15836 100 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 UNQ9165/PRO28630Q6UXU0 137 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 DEFB125Q8N687 156 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 POLEQ07864 2286 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 ZC2HC1AQ96GY0 325 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 PKIGQ9Y2B9 76 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 PAM16Q9Y3D7 125 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 MRPL23Q16540 153 aaKnown RBP7.79□□□□□ -1.16
USP54-201ENST00000339859 F8W735 103 aaPredicted RBP7.79□□□□□ -1.16
USP54-201ENST00000339859 EIF4EBP1Q13541 118 aaPredicted RBP7.79□□□□□ -1.16
USP54-201ENST00000339859 FAM231DQ6ZW35 169 aa7.79□□□□□ -1.16
USP54-201ENST00000339859 A0A0J9YY99 117 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 DPM2O94777 84 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 DEFB114Q30KQ6 69 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 GFI1BQ5VTD9 330 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 NIT1Q86X76 327 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 IGHV1-24A0A0C4DH33 117 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 AVPP01185 164 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 UTF1Q5T230 341 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 C9orf47Q6ZRZ4 202 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 CBY1Q9Y3M2 126 aa7.78□□□□□ -1.16
USP54-201ENST00000339859 PET117Q6UWS5 81 aa7.77□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 761.8 ms