RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 TRBV6-1A0A0K0K1D8 114 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 CGB1A6NKQ9 187 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 E7EUB6 86 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 WNT9BO14905 357 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 GAS8-AS1O95177 125 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 CLEC3BP05452 202 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 UBE2D1P51668 147 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 PRCDQ00LT1 54 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 Q8IYB0 196 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 PRSS3P2Q8NHM4 247 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 PPDPFLQ8WWR9 84 aa4.37□□□□□ -1.71
CSDE1-202ENST00000339438 FCN3O75636 299 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 ZNF688P0C7X2 276 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 PTPN13Q12923 2485 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 FAM57AQ8TBR7 257 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 LINC01600Q96MT4 127 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 NOTCH2Q04721 2471 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 PKD1L1Q8TDX9 2849 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 TRBV20-1A0A075B6N2 111 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 TRAV8-1A0A0A6YYK1 113 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 A0A0G2JNJ9 132 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 C3orf36Q3SXR2 165 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 KLF17Q5JT82 389 aaPredicted RBP4.36□□□□□ -1.71
CSDE1-202ENST00000339438 Q6ZQT7 251 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 FAM169BQ8N8A8 192 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 OR1L8Q8NGR8 309 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 NRGNQ92686 78 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 Q9UFV3 132 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 CSDC2Q9Y534 153 aaKnown RBP4.36□□□□□ -1.71
CSDE1-202ENST00000339438 ITPR3Q14573 2671 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 LOC389332A0A1B0GUA5 103 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 WIPF1O43516 503 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 NPYP01303 97 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 MBNL2Q5VZF2 373 aaKnown RBP4.36□□□□□ -1.71
CSDE1-202ENST00000339438 FAM104BQ5XKR9 115 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 GTSCR1Q86UQ5 136 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 TEX29Q8N6K0 151 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 ODF3Q96PU9 254 aa4.36□□□□□ -1.71
CSDE1-202ENST00000339438 WNK2Q9Y3S1 2297 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 IGLV2-18A0A075B6J9 118 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 PGPA6NDG6 321 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 GRPP07492 148 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 CGB3P0DN86 165 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 CGB7P0DN87 165 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 MRPL51Q4U2R6 128 aaKnown RBP4.35□□□□□ -1.71
CSDE1-202ENST00000339438 FAM159AQ6UWV7 190 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 WFDC3Q8IUB2 231 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 THAP8Q8NA92 274 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 CD7P09564 240 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 PSMG4Q5JS54 123 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 AMN1Q8IY45 258 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 ZCCHC24Q8N2G6 241 aaKnown RBP4.35□□□□□ -1.71
CSDE1-202ENST00000339438 RNF185Q96GF1 192 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 CTSZQ9UBR2 303 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 DNAH11Q96DT5 4516 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 PLECQ15149 4684 aaKnown RBP4.35□□□□□ -1.71
CSDE1-202ENST00000339438 KMT2AQ03164 3969 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 TMEM213A2RRL7 107 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 INS-IGF2F8WCM5 200 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 CCL21O00585 134 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 DLX4Q92988 240 aaPredicted RBP4.35□□□□□ -1.71
CSDE1-202ENST00000339438 OBP2BQ9NPH6 170 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 DNAH17Q9UFH2 4485 aa4.35□□□□□ -1.71
CSDE1-202ENST00000339438 TCL1BO95988 128 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 IGLV1-44P01699 117 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 IGKCP01834 107 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 KRTAP10-9P60411 292 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 ZC2HC1BQ5TFG8 222 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 C10orf113Q5VZT2 155 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 PVRIGQ6DKI7 326 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 ZNF474Q6S9Z5 364 aaPredicted RBP4.34□□□□□ -1.71
CSDE1-202ENST00000339438 LINC00305Q7Z4B0 112 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 ANKRD29Q8N6D5 301 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 CD177Q8N6Q3 437 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 BAALCQ8WXS3 180 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 FASNP49327 2511 aaKnown RBP4.34□□□□□ -1.71
CSDE1-202ENST00000339438 TMEM78Q5T7P6 136 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 NAV3Q8IVL0 2385 aa4.34□□□□□ -1.71
CSDE1-202ENST00000339438 UPK2O00526 184 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 EIF4EBP3O60516 100 aaPredicted RBP4.34□□□□□ -1.72
CSDE1-202ENST00000339438 TBC1D28Q2M2D7 210 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 Q6ZT83 130 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 LINC01560Q8TB33 94 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 ASCL2Q99929 193 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 FBXL15Q9H469 300 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 NDUFA4L2Q9NRX3 87 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 ABCA12Q86UK0 2595 aa4.34□□□□□ -1.72
CSDE1-202ENST00000339438 NIPBLQ6KC79 2804 aaeCLIP4.33□□□□□ -1.729e-7■■□□□ 11.9
CSDE1-202ENST00000339438 SMKR1H3BMG3 65 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 SPINT2O43291 252 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 PLAUP00749 431 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 IGKV1-16P04430 117 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 IFITM1P13164 125 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 COL8A1P27658 744 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 MSMPQ1L6U9 139 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 MRGPRG-AS1Q2M3A8 158 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 ZNF826PQ6ZT77 177 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 PDPNQ86YL7 162 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 TRGV9Q99603 122 aa4.33□□□□□ -1.72
CSDE1-202ENST00000339438 VCX2Q9H322 139 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms