RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NDUFA4L2Q9NRX3 87 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 TNS1Q9HBL0 1735 aaKnown RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 H3BQ85 93 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 IGLV2-11P01706 119 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV3-13P01766 116 aa3.18□□□□□ -1.9
NEDD4-201ENST00000338963 CXorf67Q86X51 503 aaPredicted RBP3.18□□□□□ -1.9
NEDD4-201ENST00000338963 IGLV2-18A0A075B6J9 118 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 TRBV27A0A0K0K1C4 114 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 H3BRN7 92 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DAZAP2Q15038 168 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-201ENST00000338963 MIAQ16674 131 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DEFB110Q30KQ9 67 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 C16orf47Q6ZP98 133 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DEFB118Q96PH6 123 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DAZ3Q9NR90 486 aaKnown RBP3.17□□□□□ -1.9
NEDD4-201ENST00000338963 TRAV13-2A0A0B4J235 113 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 SMKR1H3BMG3 65 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 OTOFQ9HC10 1997 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF883P0CG24 379 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 FAM27E3Q08E93 113 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 KHDC1LQ5JSQ8 128 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DEFB127Q9H1M4 99 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV3-43A0A0B4J1X8 118 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 F6UB75 175 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV3-43DP0DP04 118 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 SAA4P35542 130 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 MORN5Q5VZ52 161 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 FRMPD3Q5JV73 1810 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 CCKP06307 115 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 FAM53AQ6NSI3 398 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-201ENST00000338963 CD177Q8N6Q3 437 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 NUP210LQ5VU65 1888 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 IGHV1OR21-1A0A087WYE8 117 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 DEFB108AA8MXU0 73 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 PDE6GP18545 87 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 SAP25Q8TEE9 199 aa3.17□□□□□ -1.9
NEDD4-201ENST00000338963 PAX4O43316 350 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 EFNA2O43921 213 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 MDS2Q8NDY4 140 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 MRPL53Q96EL3 112 aaKnown RBP3.16□□□□□ -1.9
NEDD4-201ENST00000338963 UBE2D4Q9Y2X8 147 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 LMO7DNF2Z398 122 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 ESRGQ1W209 222 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 CXCL17Q6UXB2 119 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF784Q8NCA9 323 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-201ENST00000338963 CHD5Q8TDI0 1954 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 I3L3M4 83 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 SAA1P0DJI8 122 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-201ENST00000338963 UBE2AP49459 152 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 LINC01548A6NM66 108 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 RPL27AP46776 148 aaKnown RBP3.16□□□□□ -1.9
NEDD4-201ENST00000338963 PCOLCEQ15113 449 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 TMEM61Q8N0U2 210 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 LY6G5BQ8NDX9 201 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 KIAA1671Q9BY89 1806 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 OXTP01178 125 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-201ENST00000338963 EEF1AKMT3Q96AZ1 226 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 ZNF524Q96C55 264 aa3.16□□□□□ -1.9
NEDD4-201ENST00000338963 M0R1W7 72 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 LENEPQ9Y5L5 61 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 IGKV1OR2-108A0A075B7D4 117 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 HOXD3P31249 432 aaPredicted RBP3.15□□□□□ -1.9
NEDD4-201ENST00000338963 FKBP1BP68106 108 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 FHL2Q14192 279 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 RPL39P5Q59GN2 51 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 KTN1-AS1Q86SY8 53 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 RNF5Q99942 180 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 NDUFA12Q9UI09 145 aa3.15□□□□□ -1.9
NEDD4-201ENST00000338963 IBA57-AS1B1ANH7 110 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 A0A1W2PP55 124 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 SAA2P0DJI9 122 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-201ENST00000338963 CXCL6P80162 114 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 GFRALQ6UXV0 394 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 TMEM131Q92545 1883 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 ZNF876PQ49A33 203 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 CLEC2BQ92478 149 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 PLXNA1Q9UIW2 1896 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 FAM223BA6NKX1 122 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 IL17DQ8TAD2 202 aa3.15□□□□□ -1.91
NEDD4-201ENST00000338963 KLF14Q8TD94 323 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-201ENST00000338963 ZNF134P52741 427 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 IGKV3D-7A0A0C4DH55 119 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 S100A4P26447 101 aaKnown RBP3.14□□□□□ -1.91
NEDD4-201ENST00000338963 ECSCRQ19T08 205 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 KLHL30-AS1Q8NEE0 82 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 Q96MF0 132 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 KLK15Q9H2R5 256 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 IGKV1D-37A0A075B6S9 117 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 FSTL3O95633 263 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 CRPP02741 224 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 MIFP14174 115 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 C3orf36Q3SXR2 165 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 OXLD1Q5BKU9 147 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 C16orf95Q9H693 158 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 LTBP1Q14766 1721 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 IGKV3D-15A0A087WSY6 115 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 H7BZZ5 65 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 CCL21O00585 134 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 SMCR5Q8TEV8 140 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms