RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MTURNQ8N3F0 131 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 ANAPC13Q9BS18 74 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 AGPAT4-IT1Q9H0P7 198 aa5.36□□□□□ -1.55
SF3B1-201ENST00000335508 GEMIN7Q9H840 131 aaKnown RBP5.36□□□□□ -1.55
SF3B1-201ENST00000335508 BBC3Q96PG8 261 aaPredicted RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 MIEN1Q9BRT3 115 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 ITPR2Q14571 2701 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 MGAQ8IWI9 3026 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 NUDT3O95989 172 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HOXA5P20719 270 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 CDSNQ15517 529 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF726P1Q15940 193 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 Q8TAT8 98 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 ST20Q9HBF5 79 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 A8MWV9 139 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 GP9P14770 177 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 IL17RELQ6ZVW7 336 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 DSCAML1Q8TD84 2053 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 IGKV2-40A0A087WW87 121 aaPredicted RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 CCL24O00175 119 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BKO60814 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 IGKV2D-40P01614 121 aaPredicted RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BJP06899 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BOP23527 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BBP33778 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BDP58876 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BCP62807 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST2H2BEQ16778 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 PATE2Q6UY27 113 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 COPS9Q8WXC6 57 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BHQ93079 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BNQ99877 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 HIST1H2BMQ99879 126 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 BPTFQ12830 3046 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 TNRC6AQ8NDV7 1962 aaKnown RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 PLA2G2AP14555 144 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 RNASE4P34096 147 aaKnown RBP5.35□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF876PQ49A33 203 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 ACTL10Q5JWF8 245 aa5.35□□□□□ -1.55
SF3B1-201ENST00000335508 TRGV4A0A0C4DH28 118 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 IFITM10A6NMD0 228 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 BRI3O95415 125 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 IGHV4-31P0DP07 118 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 FAM167A-AS1Q96KT0 104 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 KLF12Q9Y4X4 402 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 IGHV1OR15-1A0A075B7D0 117 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 VWC2LB2RUY7 222 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 TMEM238C9JI98 176 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 VCYO14598 125 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 IFI27P40305 119 aaPredicted RBP5.34□□□□□ -1.55
SF3B1-201ENST00000335508 SRSF3P84103 164 aaKnown RBP5.34□□□□□ -1.55
SF3B1-201ENST00000335508 PRR31Q5SQ13 230 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 C9JQL5 133 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 APOHP02749 345 aaPredicted RBP5.34□□□□□ -1.55
SF3B1-201ENST00000335508 HILS1P60008 231 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 SRSF1Q07955 248 aaKnown RBP eCLIP5.34□□□□□ -1.55
SF3B1-201ENST00000335508 Q6YL49 198 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 UTRNP46939 3433 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 ZNF295-AS1Q8N0V1 137 aa5.34□□□□□ -1.55
SF3B1-201ENST00000335508 CHCHD1Q96BP2 118 aaKnown RBP5.34□□□□□ -1.55
SF3B1-201ENST00000335508 NACAE9PAV3 2078 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 A0A087WX48 190 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 CRYGBP07316 175 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 TMEM97Q5BJF2 176 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 SLC25A34Q6PIV7 304 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 CYYR1Q96J86 154 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 LINC00479Q96M42 142 aa5.34□□□□□ -1.56
SF3B1-201ENST00000335508 A6NJY4 79 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 LYZL1Q6UWQ5 148 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 UQCR10Q9UDW1 63 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 ZNF324O75467 553 aaPredicted RBP5.33□□□□□ -1.56
SF3B1-201ENST00000335508 LINC00614P0C842 121 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 SRSF9Q13242 221 aaKnown RBP eCLIP5.33□□□□□ -1.56
SF3B1-201ENST00000335508 CIRBPQ14011 172 aaKnown RBP5.33□□□□□ -1.56
SF3B1-201ENST00000335508 GLMPQ8WWB7 406 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 LBHQ53QV2 105 aaPredicted RBP5.33□□□□□ -1.56
SF3B1-201ENST00000335508 TMEM101Q96IK0 257 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 RCHY1Q96PM5 261 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 C20orf144Q9BQM9 153 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 SELENOKQ9Y6D0 94 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 PKIAP61925 76 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 OR10J3Q5JRS4 329 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 V9GYY9 64 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 APOC4P55056 127 aa5.33□□□□□ -1.56
SF3B1-201ENST00000335508 TRBV6-1A0A0K0K1D8 114 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 PRSS46E5RG02 174 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 SH2D1AO60880 128 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 C10orf91Q5T1B1 145 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 PRADC1Q9BSG0 188 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 C7orf71A4D174 169 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 SCGB3A1Q96QR1 104 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 GTSF1LQ9H1H1 148 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 KLK15Q9H2R5 256 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 WI2-2373I1.2A0A1W2PRP0 233 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 SERF1AO75920 110 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 CA1P00915 261 aaPredicted RBP5.32□□□□□ -1.56
SF3B1-201ENST00000335508 C9orf66Q5T8R8 295 aa5.32□□□□□ -1.56
SF3B1-201ENST00000335508 TMEM61Q8N0U2 210 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms