RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 TRRAPQ9Y4A5 3859 aa14.1□□□□□ -0.15
EXOSC3-201ENST00000327304 HIGD1CA8MV81 97 aa14.09□□□□□ -0.15
EXOSC3-201ENST00000327304 SAMD13Q5VXD3 122 aa14.09□□□□□ -0.15
EXOSC3-201ENST00000327304 ATP5L2Q7Z4Y8 100 aa14.09□□□□□ -0.15
EXOSC3-201ENST00000327304 PPP1R14DQ9NXH3 145 aa14.09□□□□□ -0.15
EXOSC3-201ENST00000327304 IGKV3-7A0A075B6H7 116 aa14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 SNURFLB1AK76 121 aa14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 PRB4P10163 310 aaPredicted RBP14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 OR2D3Q8NGH3 330 aa14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 DYNLRB2Q8TF09 96 aa14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 SIGLEC8Q9NYZ4 499 aa14.08□□□□□ -0.15
EXOSC3-201ENST00000327304 SAP30O75446 220 aa14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 FOXA3P55318 350 aaPredicted RBP14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 RPL11P62913 178 aaKnown RBP14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 FAM162BQ5T6X4 162 aa14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 C9orf47Q6ZRZ4 202 aa14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 ASCL2Q99929 193 aa14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 MRPL18Q9H0U6 180 aaKnown RBP14.08□□□□□ -0.16
EXOSC3-201ENST00000327304 SPINK4O60575 86 aa14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 DEFB114Q30KQ6 69 aa14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 SMUG1Q53HV7 270 aa14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 COA6Q5JTJ3 125 aaKnown RBP14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 MRPL54Q6P161 138 aaKnown RBP14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 TMEM136Q6ZRR5 245 aa14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 GTSF1Q8WW33 167 aa14.07□□□□□ -0.16
EXOSC3-201ENST00000327304 HLA-DQA1P01909 254 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 ERCC8Q13216 396 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 TMEM78Q5T7P6 136 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 RBPMS2Q6ZRY4 209 aaKnown RBP14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 Q8TAT8 98 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 FRMD6-AS1P0C7T7 363 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 AGPAT4-IT1Q9H0P7 198 aa14.06□□□□□ -0.16
EXOSC3-201ENST00000327304 SH2D1AO60880 128 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 ZNF138P52744 262 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 CD300EQ496F6 205 aaPredicted RBP14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 TMEM61Q8N0U2 210 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 ZNF738Q8NE65 137 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 C20orf173Q96LM9 149 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 LENEPQ9Y5L5 61 aa14.05□□□□□ -0.16
EXOSC3-201ENST00000327304 A0A1B0GXF2 115 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 CD33P20138 364 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 Q6AWC8 147 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 GPR61Q9BZJ8 451 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 XKRY2A2RUG3 117 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 AKR1D1P51857 326 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 WFDC9Q8NEX5 89 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 MS4A6AQ9H2W1 248 aa14.04□□□□□ -0.16
EXOSC3-201ENST00000327304 NOTCH3Q9UM47 2321 aa14.03□□□□□ -0.16
EXOSC3-201ENST00000327304 TFPI2P48307 235 aa14.03□□□□□ -0.16
EXOSC3-201ENST00000327304 WFDC3Q8IUB2 231 aa14.03□□□□□ -0.16
EXOSC3-201ENST00000327304 LINC00477Q96M19 166 aa14.03□□□□□ -0.16
EXOSC3-201ENST00000327304 TMEM189A5PLL7 270 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 FABP5P3A8MUU1 101 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 IGLV1-51P01701 117 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 ID1P41134 155 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 ZNF80P51504 273 aaPredicted RBP14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 RPS20P60866 119 aaKnown RBP14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 RAB4BP61018 213 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 HIST3H2BBQ8N257 126 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 DCANP1Q8TF63 244 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 PGLYRP4Q96LB8 373 aa14.02□□□□□ -0.16
EXOSC3-201ENST00000327304 S100A8P05109 93 aa14.01□□□□□ -0.17
EXOSC3-201ENST00000327304 HBBP68871 147 aa14.01□□□□□ -0.17
EXOSC3-201ENST00000327304 OR10J6PQ8NGY7 276 aa14.01□□□□□ -0.17
EXOSC3-201ENST00000327304 CMYA5Q8N3K9 4069 aa14.01□□□□□ -0.17
EXOSC3-201ENST00000327304 GZMBP10144 247 aa14.01□□□□□ -0.17
EXOSC3-201ENST00000327304 PKD1L1Q8TDX9 2849 aa14□□□□□ -0.17
EXOSC3-201ENST00000327304 TRAV25A0A0B4J276 109 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 K7EQG2 157 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 APCSP02743 223 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 IGLL1P15814 213 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 C9orf66Q5T8R8 295 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 TRBV7-9A0A0J9YWB2 115 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 HIST1H1AQ02539 215 aaPredicted RBP13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 GDF5OSQ5U4N7 250 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 GFI1BQ5VTD9 330 aa13.99□□□□□ -0.17
EXOSC3-201ENST00000327304 A0A1B0GUT8 65 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 A0A1B0GW15 77 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 IFITM10A6NMD0 228 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 CRISP2P16562 243 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 PAFAH1B2P68402 229 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 OR8A1Q8NGG7 326 aa13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 MCRIP2Q9BUT9 160 aaKnown RBP13.98□□□□□ -0.17
EXOSC3-201ENST00000327304 CAMPP49913 170 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 Q0VG73 95 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 RIGQ13278 110 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 LINC01559Q495D7 138 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 OR2K2Q8NGT1 345 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 SPAG8Q99932 426 aaPredicted RBP13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 S100A2P29034 98 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 INSL3P51460 131 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 BORCS7Q96B45 105 aa13.97□□□□□ -0.17
EXOSC3-201ENST00000327304 TRAV2A0A0B4J234 112 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 ZNF688P0C7X2 276 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 SLAQ13239 276 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 LINC00518Q8N0U6 118 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 GATD1Q8NB37 220 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 FAM19A4Q96LR4 140 aa13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 ZNF256Q9Y2P7 627 aaPredicted RBP13.96□□□□□ -0.17
EXOSC3-201ENST00000327304 SORL1Q92673 2214 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms