RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 CACNA1BQ00975 2339 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 ANKHD1Q8IWZ3 2542 aaKnown RBP11.3□□□□□ -0.6
SSBP3-201ENST00000326956 SAMD13Q5VXD3 122 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 ZNF479Q96JC4 524 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 TM2D2Q9BX73 214 aa11.3□□□□□ -0.6
SSBP3-201ENST00000326956 ANKRD11Q6UB99 2663 aaPredicted RBP11.3□□□□□ -0.6
SSBP3-201ENST00000326956 TRGV3P03979 118 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 C15orf32Q32M92 178 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 PRR30Q53SZ7 412 aaPredicted RBP11.29□□□□□ -0.6
SSBP3-201ENST00000326956 VMO1Q7Z5L0 202 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 Q8NA96 180 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 RBAKDNA6NC62 111 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 K7EMI3 77 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 CLEC3BP05452 202 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 SRSF1Q07955 248 aaKnown RBP eCLIP11.29□□□□□ -0.6
SSBP3-201ENST00000326956 DCHS1Q96JQ0 3298 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 TRAV26-2A0A0B4J265 109 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 IGKV3D-20A0A0C4DH25 116 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 ODF3BA8MYP8 253 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 ZNF575Q86XF7 245 aa11.29□□□□□ -0.6
SSBP3-201ENST00000326956 ZZEF1O43149 2961 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 MED13LQ71F56 2210 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.28□□□□□ -0.6
SSBP3-201ENST00000326956 AGPAT4-IT1Q9H0P7 198 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 SPTA1P02549 2419 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 KALRNO60229 2985 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 BUB3O43684 328 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 HLA-DRB4P13762 266 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 HLA-DRB4X5D2U9 266 aa11.28□□□□□ -0.6
SSBP3-201ENST00000326956 A0A087WX48 190 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 IGLL5B9A064 214 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 PLNP26678 52 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 SCGB2A2Q13296 93 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 TAL2Q16559 108 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 VKORC1Q9BQB6 163 aa11.27□□□□□ -0.6
SSBP3-201ENST00000326956 IGHV7-81A0A0B4J1V7 117 aa11.27□□□□□ -0.61
SSBP3-201ENST00000326956 F8W1H4 67 aa11.27□□□□□ -0.61
SSBP3-201ENST00000326956 ZNF207O43670 478 aaKnown RBP11.27□□□□□ -0.61
SSBP3-201ENST00000326956 DMXL2Q8TDJ6 3036 aa11.27□□□□□ -0.61
SSBP3-201ENST00000326956 DMXL1Q9Y485 3027 aa11.27□□□□□ -0.61
SSBP3-201ENST00000326956 OOSP1A8MZH6 123 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 EFNA4P52798 201 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 FOXI2Q6ZQN5 318 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 PHLDA1Q8WV24 401 aaPredicted RBP11.26□□□□□ -0.61
SSBP3-201ENST00000326956 SIGMAR1Q99720 223 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 IGLV2-18A0A075B6J9 118 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 OR11H12B2RN74 326 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 E9PLD3 99 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 C12orf74Q32Q52 190 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 MAPKAPK5-AS1Q8N8E1 139 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 OR11H1Q8NG94 326 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 OR11H2Q8NH07 326 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 GTSF1LQ9H1H1 148 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 KLK15Q9H2R5 256 aa11.26□□□□□ -0.61
SSBP3-201ENST00000326956 CLEC19AQ6UXS0 136 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 ZNF502Q8TBZ5 544 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 METTL26Q96S19 204 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 C11orf21Q9P2W6 132 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 AGRNO00468 2067 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 FAM110DQ8TAY7 271 aaPredicted RBP11.25□□□□□ -0.61
SSBP3-201ENST00000326956 HIF1ANQ9NWT6 349 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 H3BMG7 143 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 H7C1H1 209 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 WFDC2Q14508 124 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 MINOS1Q5TGZ0 78 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 NRACQ8N912 160 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 MINOS1-NBL1R4GNA1 71 aa11.25□□□□□ -0.61
SSBP3-201ENST00000326956 H3BVH4 76 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 Q8N6K4 173 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 SCGB3A1Q96QR1 104 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 ZFAND3Q9H8U3 227 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 TACC2O95359 2948 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 SMAGPQ0VAQ4 97 aa11.24□□□□□ -0.61
SSBP3-201ENST00000326956 F8VRH5 84 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 AZU1P20160 251 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 GRNP28799 593 aaKnown RBP11.23□□□□□ -0.61
SSBP3-201ENST00000326956 Q8N9W7 124 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 TSSC4Q9Y5U2 329 aaPredicted RBP11.23□□□□□ -0.61
SSBP3-201ENST00000326956 GAGE13Q4V321 117 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 C16orf92Q96LL3 132 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 SMIM2Q9BVW6 85 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 SPTBN1Q01082 2364 aaKnown RBP11.23□□□□□ -0.61
SSBP3-201ENST00000326956 LAMA5O15230 3695 aa11.23□□□□□ -0.61
SSBP3-201ENST00000326956 IGHV7-4-1A0A0J9YVY3 117 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 S100A4P26447 101 aaKnown RBP11.22□□□□□ -0.61
SSBP3-201ENST00000326956 EBI3Q14213 229 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 ETDBQ3ZM63 59 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 CD300EQ496F6 205 aaPredicted RBP11.22□□□□□ -0.61
SSBP3-201ENST00000326956 ORMDL2Q53FV1 153 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 C8orf86Q6ZUL3 223 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 EEF1AKMT3Q96AZ1 226 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 MRAP2Q96G30 205 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 AMTNQ6UX39 209 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 M0R381 172 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 ATP6V0E1O15342 81 aa11.22□□□□□ -0.61
SSBP3-201ENST00000326956 SPANXB1Q9NS25 103 aaPredicted RBP11.22□□□□□ -0.61
SSBP3-201ENST00000326956 NBASA2RRP1 2371 aa11.21□□□□□ -0.61
SSBP3-201ENST00000326956 PTPRZ1P23471 2315 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms