RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SPOCK3Q9BQ16 436 aa11.58□□□□□ -0.56
TCOF1-201ENST00000323668 RNASE8Q8TDE3 154 aaKnown RBP11.57□□□□□ -0.56
TCOF1-201ENST00000323668 DYNAPQ8N1N2 210 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 DEFB104AQ8WTQ1 72 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 RHPN1-AS1Q9BWJ2 59 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 EXPH5Q8NEV8 1989 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 PIEZO2Q9H5I5 2752 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 H3BUX3 64 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 ADAMTSL5Q6ZMM2 481 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 PCP2Q8IVA1 136 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 SNCGO76070 127 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 CTRLP40313 264 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 C1orf159Q96HA4 380 aa11.57□□□□□ -0.56
TCOF1-201ENST00000323668 IGLV11-55A0A075B6I3 123 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 TRAV26-2A0A0B4J265 109 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 A0A1W2PPM0 123 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 DUSP14O95147 198 aaKnown RBP11.56□□□□□ -0.56
TCOF1-201ENST00000323668 CDKN1BP46527 198 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 C2orf66Q6UXQ4 117 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 C22orf34Q6ZV56 151 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 IGFBPL1Q8WX77 278 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 AGPAT4-IT1Q9H0P7 198 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 FCN3O75636 299 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 C1orf122Q6ZSJ8 110 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 DUX3Q96PT4 197 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 PGPEP1Q9NXJ5 209 aa11.56□□□□□ -0.56
TCOF1-201ENST00000323668 MUC6Q6W4X9 2439 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 ZNF688P0C7X2 276 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 NPBQ8NG41 125 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 TRAV2A0A0B4J234 112 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 TRAV12-3A0A0B4J271 114 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 TRBV6-1A0A0K0K1D8 114 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 TAX1BP3O14907 124 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 GTSF1LQ9H1H1 148 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 LY6DQ14210 128 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 MSRB1Q9NZV6 116 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 A8MWV9 139 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 SMIM2Q9BVW6 85 aa11.55□□□□□ -0.56
TCOF1-201ENST00000323668 C19orf54Q5BKX5 351 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 DLX4Q92988 240 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-201ENST00000323668 CTSGP08311 255 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 TTC32Q5I0X7 151 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 F8VRH5 84 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 PRO3102Q9H379 93 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 CHD7Q9P2D1 2997 aa11.54□□□□□ -0.56
TCOF1-201ENST00000323668 WI2-2373I1.2A0A1W2PRP0 233 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 LINC00310P59036 64 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 RNF114Q9Y508 228 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 GRNP28799 593 aaKnown RBP11.53□□□□□ -0.56
TCOF1-201ENST00000323668 EMP1P54849 157 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 MEIG1Q5JSS6 88 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 OVOL3O00110 214 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 COPS9Q8WXC6 57 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 ACACBO00763 2458 aa11.53□□□□□ -0.56
TCOF1-201ENST00000323668 GATA1P15976 413 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-201ENST00000323668 DAZ1Q9NQZ3 744 aaKnown RBP11.53□□□□□ -0.56
TCOF1-201ENST00000323668 PSMB11A5LHX3 300 aa11.52□□□□□ -0.56
TCOF1-201ENST00000323668 A0A087WWL8 130 aa11.52□□□□□ -0.57
TCOF1-201ENST00000323668 TLN1Q9Y490 2541 aaKnown RBP11.52□□□□□ -0.57
TCOF1-201ENST00000323668 TRGV11A0A075B6L2 103 aa11.52□□□□□ -0.57
TCOF1-201ENST00000323668 IGHV3-64A0A075B6Q5 118 aa11.52□□□□□ -0.57
TCOF1-201ENST00000323668 CFHR4Q92496 578 aa11.52□□□□□ -0.57
TCOF1-201ENST00000323668 ERG28Q9UKR5 140 aa11.52□□□□□ -0.57
TCOF1-201ENST00000323668 IGHV7-81A0A0B4J1V7 117 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 RBAKDNA6NC62 111 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 ETDBQ3ZM63 59 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 ZNF876PQ49A33 203 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 SPATA12Q7Z6I5 190 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 TRAV8-2A0A0B4J237 113 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 CD28P10747 220 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 UBE2L6O14933 153 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 COX6B1P14854 86 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 MYCNOSP40205 109 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 CEND1Q8N111 149 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 PTPRQQ9UMZ3 2332 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 ANXA2RQ3ZCQ2 193 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 RUSC1-AS1Q66K80 236 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 LINC01587Q99440 93 aa11.51□□□□□ -0.57
TCOF1-201ENST00000323668 A0A087WX48 190 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 MYMXA0A1B0GTQ4 84 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 TAL2Q16559 108 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 K7ERJ3 54 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 HLA-DRB4P13762 266 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 HLA-DRB4X5D2U9 266 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 FAM208BQ5VWN6 2430 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 SLC25A16P16260 332 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 LCNL1Q6ZST4 164 aa11.5□□□□□ -0.57
TCOF1-201ENST00000323668 TMEM262E9PQX1 116 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 ITLN2Q8WWU7 325 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-201ENST00000323668 TP53TG1Q9Y2A0 90 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 TANC2Q9HCD6 1990 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 TMEM238C9JI98 176 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 BUB3O43684 328 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 BOD1L2Q8IYS8 172 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 TRBV25-1A0A075B6N4 114 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 NDUFA4O00483 81 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 FOXE3Q13461 319 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 ZNF493Q6ZR52 646 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 FANCD2OSQ96PS1 177 aa11.49□□□□□ -0.57
TCOF1-201ENST00000323668 PRADC1Q9BSG0 188 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms