RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ESRGQ1W209 222 aa13.53□□□□□ -0.24
LIME1-201ENST00000309546 IBA57Q5T440 356 aaKnown RBP13.53□□□□□ -0.24
LIME1-201ENST00000309546 MUC21Q5SSG8 566 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 LYPD1Q8N2G4 141 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 VSIG2Q96IQ7 327 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 HYLS1Q96M11 299 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 C18orf15Q96N68 181 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 WFDC1Q9HC57 220 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 RPH3ALQ9UNE2 315 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 MUC4Q99102 2169 aa13.52□□□□□ -0.25
LIME1-201ENST00000309546 RBAKDNA6NC62 111 aa13.51□□□□□ -0.25
LIME1-201ENST00000309546 ZNF415Q09FC8 603 aa13.51□□□□□ -0.25
LIME1-201ENST00000309546 TTC32Q5I0X7 151 aa13.51□□□□□ -0.25
LIME1-201ENST00000309546 MRPS16Q9Y3D3 137 aaKnown RBP13.51□□□□□ -0.25
LIME1-201ENST00000309546 PCLOQ9Y6V0 5065 aa13.51□□□□□ -0.25
LIME1-201ENST00000309546 A0A096LPF7 62 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 TRBV7-9A0A0J9YWB2 115 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 DIRC3C9JPN6 131 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 ACOT6Q3I5F7 207 aaPredicted RBP13.5□□□□□ -0.25
LIME1-201ENST00000309546 ST6GAL2Q96JF0 529 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 UPK3BQ9BT76 320 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 KRTAP1-5Q9BYS1 174 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 ALG5Q9Y673 324 aa13.5□□□□□ -0.25
LIME1-201ENST00000309546 A0A1W2PPV4 95 aa13.49□□□□□ -0.25
LIME1-201ENST00000309546 RAB2AP61019 212 aa13.49□□□□□ -0.25
LIME1-201ENST00000309546 ZNF266Q14584 549 aa13.49□□□□□ -0.25
LIME1-201ENST00000309546 CMTM2Q8TAZ6 248 aa13.49□□□□□ -0.25
LIME1-201ENST00000309546 RYR1P21817 5038 aa13.48□□□□□ -0.25
LIME1-201ENST00000309546 PAX4O43316 350 aa13.48□□□□□ -0.25
LIME1-201ENST00000309546 OTORQ9NRC9 128 aa13.48□□□□□ -0.25
LIME1-201ENST00000309546 PGPA6NDG6 321 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 C16orf90A8MZG2 172 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 HMGB3O15347 200 aaKnown RBP13.47□□□□□ -0.25
LIME1-201ENST00000309546 FAM74A1Q5RGS3 127 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 PQLC2Q6ZP29 291 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 NAGKQ9UJ70 344 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 ICOSQ9Y6W8 199 aa13.47□□□□□ -0.25
LIME1-201ENST00000309546 TMEM183BQ1AE95 376 aa13.46□□□□□ -0.25
LIME1-201ENST00000309546 TMEM183AQ8IXX5 376 aa13.46□□□□□ -0.25
LIME1-201ENST00000309546 C8orf49Q96NF6 230 aa13.46□□□□□ -0.25
LIME1-201ENST00000309546 MDFICQ9P1T7 246 aa13.46□□□□□ -0.25
LIME1-201ENST00000309546 Q6AWC8 147 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 FAM159AQ6UWV7 190 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 GOLT1AQ6ZVE7 132 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 HSD17B11Q8NBQ5 300 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 OR10G4Q8NGN3 311 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 OR10G9Q8NGN4 311 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 OR10G7Q8NGN6 311 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 PRO0255Q9UI72 69 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 LENEPQ9Y5L5 61 aa13.45□□□□□ -0.26
LIME1-201ENST00000309546 TRGV11A0A075B6L2 103 aa13.44□□□□□ -0.26
LIME1-201ENST00000309546 TRGV4A0A0C4DH28 118 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 A0A1W2PPQ1 181 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 F6UZH7 168 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 SFTA3P0C7M3 94 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 CDC34P49427 236 aaPredicted RBP13.43□□□□□ -0.26
LIME1-201ENST00000309546 CRYBA4P53673 196 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 GNG5P63218 68 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 FHL2Q14192 279 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 TMED6Q8WW62 240 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 HHLA3Q9XRX5 114 aa13.43□□□□□ -0.26
LIME1-201ENST00000309546 TRAV8-1A0A0A6YYK1 113 aa13.42□□□□□ -0.26
LIME1-201ENST00000309546 ARL14EPLP0DKL9 152 aa13.42□□□□□ -0.26
LIME1-201ENST00000309546 SLAQ13239 276 aa13.42□□□□□ -0.26
LIME1-201ENST00000309546 MED28Q9H204 178 aa13.42□□□□□ -0.26
LIME1-201ENST00000309546 SIVA1O15304 175 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 NXPH4O95158 308 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 PTTG1O95997 202 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 SPATA12Q7Z6I5 190 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 ZNF479Q96JC4 524 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 SPXQ9BT56 116 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 TREM1Q9NP99 234 aa13.41□□□□□ -0.26
LIME1-201ENST00000309546 MRPL23Q16540 153 aaKnown RBP13.4□□□□□ -0.26
LIME1-201ENST00000309546 SGK494Q96LW2 274 aa13.4□□□□□ -0.26
LIME1-201ENST00000309546 TRAV21A0A0B4J279 112 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 GNRH2O43555 120 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 LINC00315P59091 139 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 OR2G3Q8NGZ4 309 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 PCNPQ8WW12 178 aaKnown RBP13.39□□□□□ -0.27
LIME1-201ENST00000309546 RASL10AQ92737 203 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 TVP23CQ96ET8 276 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 AQP10Q96PS8 301 aa13.39□□□□□ -0.27
LIME1-201ENST00000309546 STAG3L2P0CL84 134 aa13.38□□□□□ -0.27
LIME1-201ENST00000309546 STAG3L3P0CL85 134 aa13.38□□□□□ -0.27
LIME1-201ENST00000309546 ATP6V0CP27449 155 aa13.38□□□□□ -0.27
LIME1-201ENST00000309546 NEGR1Q7Z3B1 354 aa13.38□□□□□ -0.27
LIME1-201ENST00000309546 PSMG3Q9BT73 122 aaPredicted RBP13.38□□□□□ -0.27
LIME1-201ENST00000309546 IGHV3-16A0A0C4DH30 117 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 TYMSP04818 313 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 GYPEP15421 78 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 GCHFRP30047 84 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 SRIP30626 198 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 TDRG1Q3Y452 100 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 LYPD5Q6UWN5 251 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 ARL6IP6Q8N6S5 226 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 RAB24Q969Q5 203 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 NDFIP1Q9BT67 221 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 SDF2L1Q9HCN8 221 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 LRP1BQ9NZR2 4599 aa13.37□□□□□ -0.27
LIME1-201ENST00000309546 M0R2P5 195 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 240.6 ms