RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 BRD3OSQ6XYD6 125 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 RS1O15537 224 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 ZNF493Q6ZR52 646 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 DEFB125Q8N687 156 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 FAM110DQ8TAY7 271 aaPredicted RBP11.12□□□□□ -0.63
CSPG4-201ENST00000308508 IGHV2-70DA0A0C4DH43 119 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 COLQQ9Y215 455 aaPredicted RBP11.12□□□□□ -0.63
CSPG4-201ENST00000308508 EPOPA6NHQ4 379 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 ZNF134P52741 427 aa11.12□□□□□ -0.63
CSPG4-201ENST00000308508 ZSWIM8A7E2V4 1837 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 RHOHQ15669 191 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 DKK2Q9UBU2 259 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 A0A0B4J2C4 111 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 MP68P56378 58 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 HERV-K104P63124 156 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 DEFB121Q5J5C9 76 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 RLFQ13129 1914 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 A0A1B0GX51 115 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 XCL2Q9UBD3 114 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 CFHR3Q02985 330 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 ZC2HC1AQ96GY0 325 aa11.11□□□□□ -0.63
CSPG4-201ENST00000308508 SPACA3Q8IXA5 215 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 OBSL1O75147 1896 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 WIPF2Q8TF74 440 aaPredicted RBP11.1□□□□□ -0.63
CSPG4-201ENST00000308508 KIR2DL5BA0A0G2JN68 375 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 KIR2DL5BA0A0G2JPC4 375 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 H3BRN7 92 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 VWC2Q2TAL6 325 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 FOXI2Q6ZQN5 318 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 C5orf24Q7Z6I8 188 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 KIR2DL5AQ8N109 375 aa11.1□□□□□ -0.63
CSPG4-201ENST00000308508 ANXA2RQ3ZCQ2 193 aa11.09□□□□□ -0.63
CSPG4-201ENST00000308508 FAM236AA0A1B0GUQ0 79 aa11.09□□□□□ -0.63
CSPG4-201ENST00000308508 TEX48A0A1B0GUV7 120 aa11.09□□□□□ -0.63
CSPG4-201ENST00000308508 FAM236BA0A1B0GV22 79 aa11.09□□□□□ -0.63
CSPG4-201ENST00000308508 ZFP36L1Q07352 338 aaKnown RBP11.09□□□□□ -0.63
CSPG4-201ENST00000308508 ZNF726P1Q15940 193 aa11.09□□□□□ -0.63
CSPG4-201ENST00000308508 PSMB8P28062 276 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 SVIPQ8NHG7 77 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 SPATA25Q9BR10 227 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 ZNF581Q9P0T4 197 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 IGHV3-38A0A0C4DH36 116 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 ZNF833PQ6ZTB9 187 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 LINC01356Q8N9X3 169 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 SLC25A29Q8N8R3 303 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 C11orf52Q96A22 123 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 LINC01619G3V211 115 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 ATP6V0E1O15342 81 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 PLXNA3P51805 1871 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 NDUFA4O00483 81 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 RNF144BQ7Z419 303 aa11.08□□□□□ -0.64
CSPG4-201ENST00000308508 C5orf63A6NC05 138 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 WIPF3A6NGB9 483 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 ANGP03950 147 aaKnown RBP11.07□□□□□ -0.64
CSPG4-201ENST00000308508 APOC4P55056 127 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 TEN1Q86WV5 123 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 SIP14410 1827 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 ZNF747Q9BV97 191 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 PLCE1Q9P212 2302 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 GATA3P23771 443 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 USF3Q68DE3 2245 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 H0YGX0 51 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 LTAP01374 205 aa11.07□□□□□ -0.64
CSPG4-201ENST00000308508 LYPD2Q6UXB3 125 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 Q6ZVH6 145 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 VWA8A3KMH1 1905 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 C22orf46C9J442 243 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 CR1LQ2VPA4 569 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 SH2D6Q7Z4S9 175 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 IGFBPL1Q8WX77 278 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 FXYD5Q96DB9 178 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 Q9H8V8 135 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 PKIGQ9Y2B9 76 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 K7EM74 188 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 VOPP1Q96AW1 172 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 UBE2E1P51965 193 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 TEX36Q5VZQ5 186 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 DEFB105AQ8NG35 78 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 ICOSQ9Y6W8 199 aa11.06□□□□□ -0.64
CSPG4-201ENST00000308508 CGB3P0DN86 165 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 SIPA1L1O43166 1804 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 BAALCQ8WXS3 180 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 IGKV1-6A0A0C4DH72 117 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 LMO1P25800 156 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 FOXL2NBQ6ZUU3 175 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 PCP2Q8IVA1 136 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 TRAV12-2A0A075B6T6 113 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 A0A0G2JNJ9 132 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 Q9UFV3 132 aa11.05□□□□□ -0.64
CSPG4-201ENST00000308508 MRPL53Q96EL3 112 aaKnown RBP11.05□□□□□ -0.64
CSPG4-201ENST00000308508 IGLL5B9A064 214 aa11.04□□□□□ -0.64
CSPG4-201ENST00000308508 IGLC1P0CG04 106 aa11.04□□□□□ -0.64
CSPG4-201ENST00000308508 LHBP01229 141 aa11.04□□□□□ -0.64
CSPG4-201ENST00000308508 DYNAPQ8N1N2 210 aa11.04□□□□□ -0.64
CSPG4-201ENST00000308508 CACNA1HO95180 2353 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 TNS1Q9HBL0 1735 aaKnown RBP11.03□□□□□ -0.64
CSPG4-201ENST00000308508 CLPSP04118 112 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 CGB7P0DN87 165 aa11.03□□□□□ -0.64
CSPG4-201ENST00000308508 DENND4AQ7Z401 1863 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms