RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 C9JCJ5 164 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 CCSO14618 274 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 PLA2G10O15496 165 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 PSCAO43653 123 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 IL7P13232 177 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 SULT1A1P50225 295 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 STX12Q86Y82 276 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 WFDC10BQ8IUB3 73 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 EXOC3-AS1Q8N2X6 119 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 SPXQ9BT56 116 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 GPN1Q9HCN4 374 aaPredicted RBP9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 MDFICQ9P1T7 246 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 ZNF492Q9P255 531 aa9.98□□□□□ -0.81
CCDC88B-201ENST00000301897 IGKV2-40A0A087WW87 121 aaPredicted RBP9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 IGLV5-52A0A0A0MRZ9 124 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 UBE2L5PA0A1B0GUS4 154 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 J3QL48 77 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 IGKV2D-40P01614 121 aaPredicted RBP9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 PYYP10082 97 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 GYPEP15421 78 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 ZNF138P52744 262 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 ATP6V1FQ16864 119 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 LINC00299Q6ZSB3 139 aa9.97□□□□□ -0.81
CCDC88B-201ENST00000301897 C5orf51A6NDU8 294 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 FAM25EA8MYX2 175 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 FGF7P21781 194 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 PRR9Q5T870 116 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 FAM122CQ6P4D5 195 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 RASL10AQ92737 203 aa9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 LYRM2Q9NU23 88 aaPredicted RBP9.96□□□□□ -0.82
CCDC88B-201ENST00000301897 TRGV11A0A075B6L2 103 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 RBAKDNA6NC62 111 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 NBEAP1P0C6P0 100 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 CSN1S1P47710 185 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 TIRAPP58753 221 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 ZNF266Q14584 549 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 ZNF479Q96JC4 524 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 C2orf50Q96LR7 162 aa9.95□□□□□ -0.82
CCDC88B-201ENST00000301897 TRAV4A0A0B4J268 109 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 C1QBP02746 253 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 SFTA3P0C7M3 94 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 IL15RAQ13261 267 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 TMEM252Q8N6L7 170 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 SLC25A2Q9BXI2 301 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 LENEPQ9Y5L5 61 aa9.94□□□□□ -0.82
CCDC88B-201ENST00000301897 IGHV3-38A0A0C4DH36 116 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 IGSF23A1L1A6 192 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 S100A10P60903 97 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 LINC01556Q5JQF7 62 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 FAM159AQ6UWV7 190 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 Q6ZQT7 251 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 NPCDR1Q9BY65 106 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 OR51M1Q9H341 326 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 KCNIP2Q9NS61 270 aa9.93□□□□□ -0.82
CCDC88B-201ENST00000301897 LRCOL1A6NCL2 159 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 LYRM1O43325 122 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 PLA2G1BP04054 148 aaKnown RBP9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 TCRBP04435 133 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 TMEM183BQ1AE95 376 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 MUC21Q5SSG8 566 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 Q6AWC8 147 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 TMEM183AQ8IXX5 376 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 OR4C5Q8NGB2 326 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 Q8TAT8 98 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 FAM167A-AS1Q96KT0 104 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 PAXXQ9BUH6 204 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 CCDC32Q9BV29 185 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 SLC25A31Q9H0C2 315 aa9.92□□□□□ -0.82
CCDC88B-201ENST00000301897 TRAV8-6A0A0B4J262 113 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 IBA57-AS1B1ANH7 110 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 PPT1P50897 306 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 RAB32Q13637 225 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 GCSAMLQ5JQS6 135 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 Q8N814 137 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 NHLRC2Q8NBF2 726 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 SEC22CQ9BRL7 303 aa9.91□□□□□ -0.82
CCDC88B-201ENST00000301897 TRAV6A0A075B6T7 132 aa9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 M0R2P5 195 aa9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 PFN1P07737 140 aaKnown RBP9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 HAMPP81172 84 aa9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 TDRG1Q3Y452 100 aa9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 MIR17HGQ75NE6 70 aa9.9□□□□□ -0.82
CCDC88B-201ENST00000301897 OR10J4P0C629 311 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 TMED6Q8WW62 240 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 S100ZQ8WXG8 99 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 FXYD5Q96DB9 178 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 PHYHIPLQ96FC7 376 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 TM2D2Q9BX73 214 aa9.89□□□□□ -0.83
CCDC88B-201ENST00000301897 KRTAP29-1A8MX34 341 aaPredicted RBP9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 OR7C2O60412 319 aa9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 CIDEAO60543 219 aa9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 GATA1P15976 413 aaPredicted RBP9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 LAGE3Q14657 143 aa9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 ATP5SQ99766 215 aa9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 NUDT15Q9NV35 164 aa9.88□□□□□ -0.83
CCDC88B-201ENST00000301897 RANP62826 216 aaKnown RBP9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 NHLH2Q02577 135 aa9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 OR10J3Q5JRS4 329 aa9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 THAP6Q8TBB0 222 aa9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 DEFB104AQ8WTQ1 72 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms