RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 HOXA3O43365 443 aaPredicted RBP10.49□□□□□ -0.73
SKA3-201ENST00000298260 DTX2Q86UW9 622 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 RNF125Q96EQ8 232 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 SIGLEC9Q9Y336 463 aa10.49□□□□□ -0.73
SKA3-201ENST00000298260 H3BRN7 92 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 SHISA2Q6UWI4 295 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 PIFOQ8TCI5 191 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 MRPS12O15235 138 aaKnown RBP10.48□□□□□ -0.73
SKA3-201ENST00000298260 PLEKHB2Q96CS7 222 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 ERG28Q9UKR5 140 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 TRBV20-1A0A075B6N2 111 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 GLRXP35754 106 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 CCL11P51671 97 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 KLRD1Q13241 179 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 PLGLAQ15195 96 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 AAMDCQ9H7C9 122 aa10.48□□□□□ -0.73
SKA3-201ENST00000298260 IGLC6P0CF74 106 aa10.47□□□□□ -0.73
SKA3-201ENST00000298260 KLHL30-AS1Q8NEE0 82 aa10.47□□□□□ -0.73
SKA3-201ENST00000298260 DKK4Q9UBT3 224 aa10.47□□□□□ -0.73
SKA3-201ENST00000298260 RALYQ9UKM9 306 aaKnown RBP10.47□□□□□ -0.73
SKA3-201ENST00000298260 NCBP2LA6PVI3 153 aaKnown RBP10.47□□□□□ -0.73
SKA3-201ENST00000298260 ZNF474Q6S9Z5 364 aaPredicted RBP10.47□□□□□ -0.73
SKA3-201ENST00000298260 PPP1R27Q86WC6 154 aa10.47□□□□□ -0.73
SKA3-201ENST00000298260 TRBV6-1A0A0K0K1D8 114 aa10.46□□□□□ -0.73
SKA3-201ENST00000298260 K7EIM0 57 aa10.46□□□□□ -0.73
SKA3-201ENST00000298260 EMP1P54849 157 aa10.46□□□□□ -0.73
SKA3-201ENST00000298260 PRAC2D3DTV9 90 aa10.46□□□□□ -0.74
SKA3-201ENST00000298260 CNIH1O95406 144 aa10.46□□□□□ -0.74
SKA3-201ENST00000298260 SRSF1Q07955 248 aaKnown RBP eCLIP10.46□□□□□ -0.741e-8■■■■□ 26.4
SKA3-201ENST00000298260 SEM1Q6ZVN7 128 aa10.46□□□□□ -0.74
SKA3-201ENST00000298260 C1orf162Q8NEQ5 155 aaPredicted RBP10.46□□□□□ -0.74
SKA3-201ENST00000298260 MYOZ3Q8TDC0 251 aa10.46□□□□□ -0.74
SKA3-201ENST00000298260 VKORC1Q9BQB6 163 aa10.46□□□□□ -0.74
SKA3-201ENST00000298260 VSTM5A8MXK1 200 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 K7EM74 188 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 LGALS1P09382 135 aaKnown RBP10.45□□□□□ -0.74
SKA3-201ENST00000298260 GATA4P43694 442 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 C5orf64Q2M2E5 130 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 DLX4Q92988 240 aaPredicted RBP10.45□□□□□ -0.74
SKA3-201ENST00000298260 NXT2Q9NPJ8 142 aaKnown RBP10.45□□□□□ -0.74
SKA3-201ENST00000298260 IGLV2-18A0A075B6J9 118 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 IGLV3-9A0A075B6K5 115 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 OR11H12B2RN74 326 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 FAM27E3Q08E93 113 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 OR11H1Q8NG94 326 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 OR11H2Q8NH07 326 aa10.45□□□□□ -0.74
SKA3-201ENST00000298260 MYMXA0A1B0GTQ4 84 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 ATP5LO75964 103 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 PRTN3P24158 256 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 COX7A1P24310 79 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 RNF182Q8N6D2 247 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 AJUBAQ96IF1 538 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 IGHV3OR16-13A0A075B7E8 117 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 A0A087WX48 190 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 IGHV3-74A0A0B4J1X5 117 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 PVRIGQ6DKI7 326 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 CFHR4Q92496 578 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 C11orf21Q9P2W6 132 aa10.44□□□□□ -0.74
SKA3-201ENST00000298260 SHISA9B4DS77 424 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 TCL1BO95988 128 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 NHLRC4P0CG21 123 aaPredicted RBP10.43□□□□□ -0.74
SKA3-201ENST00000298260 SRSF9Q13242 221 aaKnown RBP eCLIP10.43□□□□□ -0.74
SKA3-201ENST00000298260 SCGB1D4Q6XE38 83 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 ABCA4P78363 2273 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 IGHV3-66A0A0C4DH42 116 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 IGHG4P01861 327 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 TMEM78Q5T7P6 136 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 Q8N8P6 123 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 FDCSPQ8NFU4 85 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 SPTAN1Q13813 2472 aaKnown RBP10.43□□□□□ -0.74
SKA3-201ENST00000298260 CRYGBP07316 175 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 NBL1P41271 181 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 FOXC1Q12948 553 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 IL17RELQ6ZVW7 336 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 DYNAPQ8N1N2 210 aa10.43□□□□□ -0.74
SKA3-201ENST00000298260 ZFYVE26Q68DK2 2539 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 LOXP28300 417 aaPredicted RBP10.42□□□□□ -0.74
SKA3-201ENST00000298260 LAGE3Q14657 143 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 ZNF815PA8K554 130 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 CCDC179H3BU77 68 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 CRLF1O75462 422 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 IGHV1-8P0DP01 117 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 SLC25A16P16260 332 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 HERV-K104P63124 156 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 TAL2Q16559 108 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 TEX36Q5VZQ5 186 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 GFRALQ6UXV0 394 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 ANKRD29Q8N6D5 301 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 PRADC1Q9BSG0 188 aa10.42□□□□□ -0.74
SKA3-201ENST00000298260 J3KRW8 73 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 CRIP2P52943 208 aaPredicted RBP10.41□□□□□ -0.74
SKA3-201ENST00000298260 DEFB109BQ30KR1 87 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 TNFRSF13BO14836 293 aaPredicted RBP10.41□□□□□ -0.74
SKA3-201ENST00000298260 NDUFB3O43676 98 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 C1orf122Q6ZSJ8 110 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 LYPD1Q8N2G4 141 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 SMIM20Q8N5G0 67 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 C3orf56Q8N813 242 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 RAXQ9Y2V3 346 aa10.41□□□□□ -0.74
SKA3-201ENST00000298260 ZFHX3Q15911 3703 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms