RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RPLP1P05386 114 aaKnown RBP12.92□□□□□ -0.34
CPSF4-201ENST00000292476 IGLC3P0DOY3 106 aa12.92□□□□□ -0.34
CPSF4-201ENST00000292476 SAPCD1Q5SSQ6 148 aa12.92□□□□□ -0.34
CPSF4-201ENST00000292476 TMEM70Q9BUB7 260 aa12.92□□□□□ -0.34
CPSF4-201ENST00000292476 ZNF702PQ9H963 129 aa12.92□□□□□ -0.34
CPSF4-201ENST00000292476 MXRA5Q9NR99 2828 aa12.91□□□□□ -0.34
CPSF4-201ENST00000292476 TRAV9-2A0A087WT02 112 aa12.91□□□□□ -0.34
CPSF4-201ENST00000292476 ELANEP08246 267 aa12.91□□□□□ -0.34
CPSF4-201ENST00000292476 EBLN2Q6P2I7 272 aa12.91□□□□□ -0.34
CPSF4-201ENST00000292476 LINC00614P0C842 121 aa12.9□□□□□ -0.34
CPSF4-201ENST00000292476 PSMB8P28062 276 aa12.9□□□□□ -0.34
CPSF4-201ENST00000292476 ARL3P36405 182 aa12.9□□□□□ -0.34
CPSF4-201ENST00000292476 FOXE3Q13461 319 aa12.9□□□□□ -0.34
CPSF4-201ENST00000292476 ZNF493Q6ZR52 646 aa12.9□□□□□ -0.34
CPSF4-201ENST00000292476 ZNF418Q8TF45 676 aaPredicted RBP12.9□□□□□ -0.34
CPSF4-201ENST00000292476 SRSF2Q01130 221 aaKnown RBP12.89□□□□□ -0.35
CPSF4-201ENST00000292476 RPS20P60866 119 aaKnown RBP12.89□□□□□ -0.35
CPSF4-201ENST00000292476 KRTAP21-3Q3LHN1 58 aa12.89□□□□□ -0.35
CPSF4-201ENST00000292476 A0A087X0K7 114 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 IGHV1-24A0A0C4DH33 117 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 DNAJC9-AS1A6NH13 148 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 CRIP1P50238 77 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 OR4X2Q8NGF9 303 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 JMJD8Q96S16 334 aa12.88□□□□□ -0.35
CPSF4-201ENST00000292476 M0R3E3 92 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 NDUFA4O00483 81 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 ARMS2P0C7Q2 107 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 METTL26Q96S19 204 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 KLK15Q9H2R5 256 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 ZFAND3Q9H8U3 227 aa12.87□□□□□ -0.35
CPSF4-201ENST00000292476 MRPS16Q9Y3D3 137 aaKnown RBP12.87□□□□□ -0.35
CPSF4-201ENST00000292476 LEPROTL1O95214 131 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 TMEM95Q3KNT9 176 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 COL5A1-AS1Q5SY13 56 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 PEF1Q9UBV8 284 aaKnown RBP12.86□□□□□ -0.35
CPSF4-201ENST00000292476 HSPB8Q9UJY1 196 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 TMEM189A5PLL7 270 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 BMI1P35226 326 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 HNRNPA3P51991 378 aaKnown RBP12.86□□□□□ -0.35
CPSF4-201ENST00000292476 LCN12Q6JVE5 192 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 RNF152Q8N8N0 203 aa12.86□□□□□ -0.35
CPSF4-201ENST00000292476 SYS1-DBNDD2H3BUS1 97 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 SH2D1AO60880 128 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 PET117Q6UWS5 81 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 Q6ZN92 141 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 C8orf49Q96NF6 230 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 DUX5Q96PT3 197 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 PRR25Q96S07 402 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 ST20Q9HBF5 79 aa12.85□□□□□ -0.35
CPSF4-201ENST00000292476 RBAKDNA6NC62 111 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 RNASE1P07998 156 aaKnown RBP12.84□□□□□ -0.35
CPSF4-201ENST00000292476 GAGE1Q13065 139 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 UBE2E2Q96LR5 201 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 TMEM191AQ9H0A3 160 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 U3KQK5 164 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 ATRQ13535 2644 aa12.84□□□□□ -0.35
CPSF4-201ENST00000292476 TCF21O43680 179 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 IGHV3-11P01762 117 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 FAM106AQ4KMX7 169 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 MDFIQ99750 246 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 SLC50A1Q9BRV3 221 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 MAP1LC3CQ9BXW4 147 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 CLEC5AQ9NY25 188 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 SMAD5-AS1Q9Y6J3 95 aa12.83□□□□□ -0.35
CPSF4-201ENST00000292476 IGHV3-35A0A0C4DH35 117 aa12.83□□□□□ -0.36
CPSF4-201ENST00000292476 MYOZ3Q8TDC0 251 aa12.83□□□□□ -0.36
CPSF4-201ENST00000292476 AP5S1Q9NUS5 200 aa12.83□□□□□ -0.36
CPSF4-201ENST00000292476 LAMTOR2Q9Y2Q5 125 aa12.83□□□□□ -0.36
CPSF4-201ENST00000292476 FBN1P35555 2871 aaKnown RBP12.82□□□□□ -0.36
CPSF4-201ENST00000292476 OR4C46A6NHA9 309 aa12.82□□□□□ -0.36
CPSF4-201ENST00000292476 BUB3O43684 328 aa12.82□□□□□ -0.36
CPSF4-201ENST00000292476 TSPOP30536 169 aa12.82□□□□□ -0.36
CPSF4-201ENST00000292476 HILS1P60008 231 aa12.82□□□□□ -0.36
CPSF4-201ENST00000292476 MRPL53Q96EL3 112 aaKnown RBP12.82□□□□□ -0.36
CPSF4-201ENST00000292476 IGKV2-40A0A087WW87 121 aaPredicted RBP12.81□□□□□ -0.36
CPSF4-201ENST00000292476 M0QZ24 198 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 IGKV2D-40P01614 121 aaPredicted RBP12.81□□□□□ -0.36
CPSF4-201ENST00000292476 FAM104BQ5XKR9 115 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 LYZL1Q6UWQ5 148 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 Q6ZSV7 163 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 SPATA12Q7Z6I5 190 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 GPHB5Q86YW7 130 aa12.81□□□□□ -0.36
CPSF4-201ENST00000292476 LGALS1P09382 135 aaKnown RBP12.8□□□□□ -0.36
CPSF4-201ENST00000292476 IGLL1P15814 213 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 FA2HQ7L5A8 372 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 ATOH7Q8N100 152 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 WFDC12Q8WWY7 111 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 ESM1Q9NQ30 184 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 U3KQE9 123 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 CLPSL1A2RUU4 121 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 K7EMT4 169 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 IGLC6P0CF74 106 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 KRTAP24-1Q3LI83 254 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 OR10AG1Q8NH19 301 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 CNFNQ9BYD5 112 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 C16orf95Q9H693 158 aa12.8□□□□□ -0.36
CPSF4-201ENST00000292476 TRBV12-3P01733 135 aa12.79□□□□□ -0.36
CPSF4-201ENST00000292476 LCNL1Q6ZST4 164 aa12.79□□□□□ -0.36
CPSF4-201ENST00000292476 ORMDL3Q8N138 153 aa12.79□□□□□ -0.36
CPSF4-201ENST00000292476 MS4A6AQ9H2W1 248 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms